RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 RFX7Q2KHR2 1363 aa14.26□□□□□ -0.13
USP54-209ENST00000464635 AK9Q5TCS8 1911 aa14.26□□□□□ -0.13
USP54-209ENST00000464635 TRPA1O75762 1119 aa14.26□□□□□ -0.13
USP54-209ENST00000464635 MKRN3Q13064 507 aaKnown RBP14.26□□□□□ -0.13
USP54-209ENST00000464635 CHAF1AQ13111 956 aaPredicted RBP14.26□□□□□ -0.13
USP54-209ENST00000464635 FBXO33Q7Z6M2 555 aa14.26□□□□□ -0.13
USP54-209ENST00000464635 AACSQ86V21 672 aa14.26□□□□□ -0.13
USP54-209ENST00000464635 EVI5LQ96CN4 794 aa14.26□□□□□ -0.13
USP54-209ENST00000464635 C22orf23Q9BZE7 217 aa14.26□□□□□ -0.13
USP54-209ENST00000464635 DEFB129Q9H1M3 183 aa14.26□□□□□ -0.13
USP54-209ENST00000464635 VEZTQ9HBM0 779 aa14.26□□□□□ -0.13
USP54-209ENST00000464635 CEP126Q9P2H0 1117 aa14.26□□□□□ -0.13
USP54-209ENST00000464635 ZBTB22O15209 634 aa14.25□□□□□ -0.13
USP54-209ENST00000464635 PDE8BO95263 885 aa14.25□□□□□ -0.13
USP54-209ENST00000464635 NF2P35240 595 aa14.25□□□□□ -0.13
USP54-209ENST00000464635 RBM5P52756 815 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP54-209ENST00000464635 IL17RAQ96F46 866 aa14.25□□□□□ -0.13
USP54-209ENST00000464635 SAGE1Q9NXZ1 904 aa14.25□□□□□ -0.13
USP54-209ENST00000464635 TTF2Q9UNY4 1162 aaKnown RBP14.25□□□□□ -0.13
USP54-209ENST00000464635 FGFR2P21802 821 aa14.24□□□□□ -0.13
USP54-209ENST00000464635 CHMLP26374 656 aa14.24□□□□□ -0.13
USP54-209ENST00000464635 BCAMP50895 628 aa14.24□□□□□ -0.13
USP54-209ENST00000464635 TFCP2Q12800 502 aa14.24□□□□□ -0.13
USP54-209ENST00000464635 ZNF512BQ96KM6 892 aaPredicted RBP14.24□□□□□ -0.13
USP54-209ENST00000464635 MCOLN1Q9GZU1 580 aa14.24□□□□□ -0.13
USP54-209ENST00000464635 ANGEL1Q9UNK9 670 aaKnown RBP14.24□□□□□ -0.13
USP54-209ENST00000464635 MYO1BO43795 1136 aa14.23□□□□□ -0.13
USP54-209ENST00000464635 PUM3Q15397 648 aaKnown RBP14.23□□□□□ -0.13
USP54-209ENST00000464635 LDLRAD1Q5T700 205 aa14.23□□□□□ -0.13
USP54-209ENST00000464635 NBPF12Q5TAG4 269 aaPredicted RBP14.23□□□□□ -0.13
USP54-209ENST00000464635 ARMC9Q7Z3E5 817 aa14.23□□□□□ -0.13
USP54-209ENST00000464635 VPS37DQ86XT2 251 aa14.23□□□□□ -0.13
USP54-209ENST00000464635 CDAN1Q8IWY9 1227 aa14.23□□□□□ -0.13
USP54-209ENST00000464635 RUFY2Q8WXA3 655 aa14.23□□□□□ -0.13
USP54-209ENST00000464635 SIL1Q9H173 461 aa14.23□□□□□ -0.13
USP54-209ENST00000464635 TDRD3Q9H7E2 651 aaKnown RBP14.23□□□□□ -0.13
USP54-209ENST00000464635 SNRKQ9NRH2 765 aa14.23□□□□□ -0.13
USP54-209ENST00000464635 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.23□□□□□ -0.13
USP54-209ENST00000464635 ZNF70Q9UC06 446 aaPredicted RBP14.23□□□□□ -0.13
USP54-209ENST00000464635 CRKP46108 304 aa14.22□□□□□ -0.13
USP54-209ENST00000464635 DGKZQ13574 1117 aa14.22□□□□□ -0.13
USP54-209ENST00000464635 RASA3Q14644 834 aa14.22□□□□□ -0.13
USP54-209ENST00000464635 SPDYE2Q495Y8 402 aa14.22□□□□□ -0.13
USP54-209ENST00000464635 CAVIN4Q5BKX8 364 aa14.22□□□□□ -0.13
USP54-209ENST00000464635 CLMNQ96JQ2 1002 aa14.22□□□□□ -0.13
USP54-209ENST00000464635 USP26Q9BXU7 913 aa14.22□□□□□ -0.13
USP54-209ENST00000464635 SERPINA10Q9UK55 444 aa14.22□□□□□ -0.13
USP54-209ENST00000464635 PPP2R3BQ9Y5P8 575 aa14.22□□□□□ -0.13
USP54-209ENST00000464635 TRIM6-TRIM34B2RNG4 842 aa14.21□□□□□ -0.13
USP54-209ENST00000464635 IFIT1P09914 478 aaKnown RBP14.21□□□□□ -0.13
USP54-209ENST00000464635 MFAP1P55081 439 aaKnown RBP14.21□□□□□ -0.13
USP54-209ENST00000464635 HAUS7Q99871 368 aa14.21□□□□□ -0.13
USP54-209ENST00000464635 ESYT1Q9BSJ8 1104 aa14.21□□□□□ -0.13
USP54-209ENST00000464635 DBNLQ9UJU6 430 aaKnown RBP14.21□□□□□ -0.13
USP54-209ENST00000464635 RAD50Q92878 1312 aa14.2□□□□□ -0.14
USP54-209ENST00000464635 CCDC85CA6NKD9 419 aa14.2□□□□□ -0.14
USP54-209ENST00000464635 FRAT2O75474 233 aaPredicted RBP14.2□□□□□ -0.14
USP54-209ENST00000464635 SLC5A1P13866 664 aa14.2□□□□□ -0.14
USP54-209ENST00000464635 ANAPC15P60006 121 aa14.2□□□□□ -0.14
USP54-209ENST00000464635 BECN1Q14457 450 aa14.2□□□□□ -0.14
USP54-209ENST00000464635 MAP3K11Q16584 847 aa14.2□□□□□ -0.14
USP54-209ENST00000464635 SPRYD7Q5W111 196 aa14.2□□□□□ -0.14
USP54-209ENST00000464635 CCDC8Q9H0W5 538 aaPredicted RBP14.2□□□□□ -0.14
USP54-209ENST00000464635 TCP10L2B9ZVM9 353 aa14.19□□□□□ -0.14
USP54-209ENST00000464635 TBC1D8O95759 1140 aa14.19□□□□□ -0.14
USP54-209ENST00000464635 CACNB3P54284 484 aa14.19□□□□□ -0.14
USP54-209ENST00000464635 LRRFIP1Q32MZ4 808 aaKnown RBP14.19□□□□□ -0.14
USP54-209ENST00000464635 REM2Q8IYK8 340 aaPredicted RBP14.19□□□□□ -0.14
USP54-209ENST00000464635 TBC1D22AQ8WUA7 517 aa14.19□□□□□ -0.14
USP54-209ENST00000464635 LPIN2Q92539 896 aa14.19□□□□□ -0.14
USP54-209ENST00000464635 SNX21Q969T3 373 aa14.19□□□□□ -0.14
USP54-209ENST00000464635 RILPL2Q969X0 211 aa14.19□□□□□ -0.14
USP54-209ENST00000464635 TEPSINQ96N21 525 aa14.19□□□□□ -0.14
USP54-209ENST00000464635 TMEM39BQ9GZU3 492 aa14.19□□□□□ -0.14
USP54-209ENST00000464635 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.19□□□□□ -0.14
USP54-209ENST00000464635 MYH2Q9UKX2 1941 aa14.19□□□□□ -0.14
USP54-209ENST00000464635 A0A1B0GUL7 405 aa14.18□□□□□ -0.14
USP54-209ENST00000464635 SGSM2O43147 1006 aa14.18□□□□□ -0.14
USP54-209ENST00000464635 PPP1R12BO60237 982 aaPredicted RBP14.18□□□□□ -0.14
USP54-209ENST00000464635 IGSF3O75054 1194 aa14.18□□□□□ -0.14
USP54-209ENST00000464635 USP2O75604 605 aaPredicted RBP14.18□□□□□ -0.14
USP54-209ENST00000464635 GJA5P36382 358 aa14.18□□□□□ -0.14
USP54-209ENST00000464635 TM4SF4P48230 202 aa14.18□□□□□ -0.14
USP54-209ENST00000464635 ATP2B3Q16720 1220 aa14.18□□□□□ -0.14
USP54-209ENST00000464635 SUPT20HL1Q3ZLR7 823 aa14.18□□□□□ -0.14
USP54-209ENST00000464635 CCDC158Q5M9N0 1113 aa14.18□□□□□ -0.14
USP54-209ENST00000464635 WNK4Q96J92 1243 aa14.18□□□□□ -0.14
USP54-209ENST00000464635 R3HDMLQ9H3Y0 253 aa14.18□□□□□ -0.14
USP54-209ENST00000464635 ADORA1P30542 326 aa14.17□□□□□ -0.14
USP54-209ENST00000464635 HDLBPQ00341 1268 aaKnown RBP14.17□□□□□ -0.14
USP54-209ENST00000464635 TNFAIP1Q13829 316 aa14.17□□□□□ -0.14
USP54-209ENST00000464635 TEKT1Q969V4 418 aa14.17□□□□□ -0.14
USP54-209ENST00000464635 SLC10A4Q96EP9 437 aa14.17□□□□□ -0.14
USP54-209ENST00000464635 MCCP23508 829 aa14.16□□□□□ -0.14
USP54-209ENST00000464635 PHKA1P46020 1223 aa14.16□□□□□ -0.14
USP54-209ENST00000464635 IREB2P48200 963 aaKnown RBP14.16□□□□□ -0.14
USP54-209ENST00000464635 SREBF2Q12772 1141 aa14.16□□□□□ -0.14
USP54-209ENST00000464635 TSHZ3Q63HK5 1081 aa14.16□□□□□ -0.14
USP54-209ENST00000464635 ZDHHC15Q96MV8 337 aa14.16□□□□□ -0.14
USP54-209ENST00000464635 DBNDD2Q9BQY9 259 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms