RNA–Protein interactions for RNA: ENST00000462817.5

LIMS1-211, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-211ENST00000462817 CSADQ9Y600 493 aa19.08■□□□□ 0.64
LIMS1-211ENST00000462817 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.08■□□□□ 0.64
LIMS1-211ENST00000462817 MANSC4A6NHS7 340 aaPredicted RBP19.07■□□□□ 0.64
LIMS1-211ENST00000462817 ZBTB48P10074 688 aaPredicted RBP19.07■□□□□ 0.64
LIMS1-211ENST00000462817 TM4SF4P48230 202 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 INHBEP58166 350 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 TNNI3KQ59H18 835 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 DCAF15Q66K64 600 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 CDC42EP5Q6NZY7 148 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 CEP85Q6P2H3 762 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 CDAN1Q8IWY9 1227 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 SPATA5Q8NB90 893 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 WNK4Q96J92 1243 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 GPR108Q9NPR9 543 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 COG6Q9Y2V7 657 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 FPGT-TNNI3KV9GXZ4 949 aa19.07■□□□□ 0.64
LIMS1-211ENST00000462817 MAP3K9P80192 1104 aa19.06■□□□□ 0.64
LIMS1-211ENST00000462817 TCP10Q12799 353 aa19.06■□□□□ 0.64
LIMS1-211ENST00000462817 FAM151AQ8WW52 585 aa19.06■□□□□ 0.64
LIMS1-211ENST00000462817 ELP3Q9H9T3 547 aa19.06■□□□□ 0.64
LIMS1-211ENST00000462817 HMG20BQ9P0W2 317 aa19.06■□□□□ 0.64
LIMS1-211ENST00000462817 CASP8AP2Q9UKL3 1982 aa19.06■□□□□ 0.64
LIMS1-211ENST00000462817 GSTO1P78417 241 aa19.05■□□□□ 0.64
LIMS1-211ENST00000462817 RAI14Q9P0K7 980 aa19.05■□□□□ 0.64
LIMS1-211ENST00000462817 LRP2BPQ9P2M1 347 aa19.05■□□□□ 0.64
LIMS1-211ENST00000462817 NOP58Q9Y2X3 529 aaKnown RBP19.05■□□□□ 0.64
LIMS1-211ENST00000462817 TBC1D8O95759 1140 aa19.04■□□□□ 0.64
LIMS1-211ENST00000462817 ALDH1A1P00352 501 aa19.04■□□□□ 0.64
LIMS1-211ENST00000462817 LDHCP07864 332 aa19.04■□□□□ 0.64
LIMS1-211ENST00000462817 ARID4AP29374 1257 aaPredicted RBP19.04■□□□□ 0.64
LIMS1-211ENST00000462817 HSP90AB4PQ58FF6 505 aa19.04■□□□□ 0.64
LIMS1-211ENST00000462817 OTUD7BQ6GQQ9 843 aa19.04■□□□□ 0.64
LIMS1-211ENST00000462817 ERC1Q8IUD2 1116 aa19.04■□□□□ 0.64
LIMS1-211ENST00000462817 OPTNQ96CV9 577 aa19.04■□□□□ 0.64
LIMS1-211ENST00000462817 HMMRO75330 724 aa19.03■□□□□ 0.64
LIMS1-211ENST00000462817 MECOMQ03112 1051 aa19.03■□□□□ 0.64
LIMS1-211ENST00000462817 DGKZQ13574 1117 aa19.03■□□□□ 0.64
LIMS1-211ENST00000462817 PI16Q6UXB8 463 aa19.03■□□□□ 0.64
LIMS1-211ENST00000462817 TBC1D9Q6ZT07 1266 aa19.03■□□□□ 0.64
LIMS1-211ENST00000462817 WRNIP1Q96S55 665 aa19.03■□□□□ 0.64
LIMS1-211ENST00000462817 DBNDD2Q9BQY9 259 aa19.03■□□□□ 0.64
LIMS1-211ENST00000462817 AK9Q5TCS8 1911 aa19.03■□□□□ 0.64
LIMS1-211ENST00000462817 MYH2Q9UKX2 1941 aa19.02■□□□□ 0.64
LIMS1-211ENST00000462817 MCAMP43121 646 aa19.02■□□□□ 0.64
LIMS1-211ENST00000462817 BTDP43251 543 aa19.02■□□□□ 0.64
LIMS1-211ENST00000462817 NFIAQ12857 509 aa19.02■□□□□ 0.64
LIMS1-211ENST00000462817 VGLL4Q14135 290 aa19.02■□□□□ 0.64
LIMS1-211ENST00000462817 MIGA2Q7L4E1 593 aa19.02■□□□□ 0.64
LIMS1-211ENST00000462817 ZSCAN29Q8IWY8 852 aaPredicted RBP19.02■□□□□ 0.64
LIMS1-211ENST00000462817 RPAP2Q8IXW5 612 aaPredicted RBP19.02■□□□□ 0.64
LIMS1-211ENST00000462817 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.02■□□□□ 0.64
LIMS1-211ENST00000462817 ABHD8Q96I13 439 aa19.02■□□□□ 0.64
LIMS1-211ENST00000462817 NOL10Q9BSC4 688 aaKnown RBP19.02■□□□□ 0.64
LIMS1-211ENST00000462817 ZNF341Q9BYN7 854 aa19.02■□□□□ 0.64
LIMS1-211ENST00000462817 CCDC8Q9H0W5 538 aaPredicted RBP19.02■□□□□ 0.64
LIMS1-211ENST00000462817 SNRKQ9NRH2 765 aa19.02■□□□□ 0.64
LIMS1-211ENST00000462817 EXOC6BQ9Y2D4 811 aa19.02■□□□□ 0.64
LIMS1-211ENST00000462817 MROH7-TTC4A0A0A0MT08 1334 aa19.01■□□□□ 0.63
LIMS1-211ENST00000462817 GAKO14976 1311 aa19.01■□□□□ 0.63
LIMS1-211ENST00000462817 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.01■□□□□ 0.63
LIMS1-211ENST00000462817 FAM163AQ96GL9 167 aaPredicted RBP19.01■□□□□ 0.63
LIMS1-211ENST00000462817 RPAP1Q9BWH6 1393 aaPredicted RBP19.01■□□□□ 0.63
LIMS1-211ENST00000462817 RGS3P49796 1198 aa19■□□□□ 0.63
LIMS1-211ENST00000462817 PICALMQ13492 652 aa19■□□□□ 0.63
LIMS1-211ENST00000462817 IFNL1Q8IU54 200 aa19■□□□□ 0.63
LIMS1-211ENST00000462817 OTUD5Q96G74 571 aa19■□□□□ 0.63
LIMS1-211ENST00000462817 MCOLN1Q9GZU1 580 aa19■□□□□ 0.63
LIMS1-211ENST00000462817 BCL11AQ9H165 835 aa19■□□□□ 0.63
LIMS1-211ENST00000462817 FAM198AQ9UFP1 575 aa19■□□□□ 0.63
LIMS1-211ENST00000462817 APBB1O00213 710 aa18.99■□□□□ 0.63
LIMS1-211ENST00000462817 ENTPD3O75355 529 aa18.99■□□□□ 0.63
LIMS1-211ENST00000462817 GJA5P36382 358 aa18.99■□□□□ 0.63
LIMS1-211ENST00000462817 PDE3AQ14432 1141 aa18.99■□□□□ 0.63
LIMS1-211ENST00000462817 ZKSCAN4Q969J2 545 aaPredicted RBP18.99■□□□□ 0.63
LIMS1-211ENST00000462817 NSUN4Q96CB9 384 aaKnown RBP18.99■□□□□ 0.63
LIMS1-211ENST00000462817 IDI2Q9BXS1 227 aa18.99■□□□□ 0.63
LIMS1-211ENST00000462817 ZBTB40Q9NUA8 1239 aa18.99■□□□□ 0.63
LIMS1-211ENST00000462817 GPR75-ASB3A0A0A6YYF3 556 aa18.98■□□□□ 0.63
LIMS1-211ENST00000462817 CCDC85CA6NKD9 419 aa18.98■□□□□ 0.63
LIMS1-211ENST00000462817 GPR25O00155 361 aa18.98■□□□□ 0.63
LIMS1-211ENST00000462817 GTF2A2P52657 109 aa18.98■□□□□ 0.63
LIMS1-211ENST00000462817 AACSQ86V21 672 aa18.98■□□□□ 0.63
LIMS1-211ENST00000462817 EAF2Q96CJ1 260 aaPredicted RBP18.98■□□□□ 0.63
LIMS1-211ENST00000462817 DBNLQ9UJU6 430 aaKnown RBP18.98■□□□□ 0.63
LIMS1-211ENST00000462817 NAA16Q6N069 864 aaPredicted RBP18.97■□□□□ 0.63
LIMS1-211ENST00000462817 ERO1BQ86YB8 467 aa18.97■□□□□ 0.63
LIMS1-211ENST00000462817 ZNF296Q8WUU4 475 aaPredicted RBP18.97■□□□□ 0.63
LIMS1-211ENST00000462817 CNKSR2Q8WXI2 1034 aa18.97■□□□□ 0.63
LIMS1-211ENST00000462817 ZNF512BQ96KM6 892 aaPredicted RBP18.97■□□□□ 0.63
LIMS1-211ENST00000462817 OTOFQ9HC10 1997 aa18.97■□□□□ 0.63
LIMS1-211ENST00000462817 CCL15-CCL14A0A0B4J2E2 113 aa18.96■□□□□ 0.63
LIMS1-211ENST00000462817 SPDYE5A6NIY4 337 aa18.96■□□□□ 0.63
LIMS1-211ENST00000462817 IGF2BP3O00425 579 aaKnown RBP eCLIP18.96■□□□□ 0.63
LIMS1-211ENST00000462817 FKTNO75072 461 aa18.96■□□□□ 0.63
LIMS1-211ENST00000462817 WDHD1O75717 1129 aaPredicted RBP18.96■□□□□ 0.63
LIMS1-211ENST00000462817 BAG3O95817 575 aa18.96■□□□□ 0.63
LIMS1-211ENST00000462817 MAP4K4O95819 1239 aaPredicted RBP18.96■□□□□ 0.63
LIMS1-211ENST00000462817 ZAP70P43403 619 aa18.96■□□□□ 0.63
LIMS1-211ENST00000462817 CCL15Q16663 113 aa18.96■□□□□ 0.63
LIMS1-211ENST00000462817 CTU1Q7Z7A3 348 aaKnown RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms