RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 CYP2E1P05181 493 aaPredicted RBP14.46□□□□□ -0.09
VPS52-213ENST00000461743 ECE1P42892 770 aa14.46□□□□□ -0.09
VPS52-213ENST00000461743 HTRA3P83110 453 aa14.46□□□□□ -0.09
VPS52-213ENST00000461743 MECOMQ03112 1051 aa14.46□□□□□ -0.09
VPS52-213ENST00000461743 SUPT20HL1Q3ZLR7 823 aa14.46□□□□□ -0.09
VPS52-213ENST00000461743 CERS3Q8IU89 383 aa14.46□□□□□ -0.09
VPS52-213ENST00000461743 HOOK2Q96ED9 719 aa14.46□□□□□ -0.09
VPS52-213ENST00000461743 RAI14Q9P0K7 980 aa14.46□□□□□ -0.09
VPS52-213ENST00000461743 LRP2BPQ9P2M1 347 aa14.46□□□□□ -0.09
VPS52-213ENST00000461743 DOCK1Q14185 1865 aa14.46□□□□□ -0.1
VPS52-213ENST00000461743 UNCXA6NJT0 531 aa14.45□□□□□ -0.1
VPS52-213ENST00000461743 ATP5JP18859 108 aa14.45□□□□□ -0.1
VPS52-213ENST00000461743 ZAP70P43403 619 aa14.45□□□□□ -0.1
VPS52-213ENST00000461743 DEFB115Q30KQ5 88 aa14.45□□□□□ -0.1
VPS52-213ENST00000461743 JMYQ8N9B5 988 aa14.45□□□□□ -0.1
VPS52-213ENST00000461743 SIPA1L1O43166 1804 aa14.45□□□□□ -0.1
VPS52-213ENST00000461743 GPR75-ASB3A0A0A6YYF3 556 aa14.44□□□□□ -0.1
VPS52-213ENST00000461743 NPM3O75607 178 aaKnown RBP14.44□□□□□ -0.1
VPS52-213ENST00000461743 BTDP43251 543 aa14.44□□□□□ -0.1
VPS52-213ENST00000461743 HUNKP57058 714 aa14.44□□□□□ -0.1
VPS52-213ENST00000461743 RASA3Q14644 834 aa14.44□□□□□ -0.1
VPS52-213ENST00000461743 MAP3K11Q16584 847 aa14.44□□□□□ -0.1
VPS52-213ENST00000461743 NAA16Q6N069 864 aaPredicted RBP14.44□□□□□ -0.1
VPS52-213ENST00000461743 CDC42EP5Q6NZY7 148 aa14.44□□□□□ -0.1
VPS52-213ENST00000461743 EXOC6Q8TAG9 804 aa14.44□□□□□ -0.1
VPS52-213ENST00000461743 NOL10Q9BSC4 688 aaKnown RBP14.44□□□□□ -0.1
VPS52-213ENST00000461743 RWDD1Q9H446 243 aaPredicted RBP14.44□□□□□ -0.1
VPS52-213ENST00000461743 SNRKQ9NRH2 765 aa14.44□□□□□ -0.1
VPS52-213ENST00000461743 ZBTB47Q9UFB7 747 aaPredicted RBP14.44□□□□□ -0.1
VPS52-213ENST00000461743 TTC41PQ6P2S7 1318 aa14.43□□□□□ -0.1
VPS52-213ENST00000461743 PLCG2P16885 1265 aa14.43□□□□□ -0.1
VPS52-213ENST00000461743 MAP3K12Q12852 859 aa14.43□□□□□ -0.1
VPS52-213ENST00000461743 TBC1D9Q6ZT07 1266 aa14.43□□□□□ -0.1
VPS52-213ENST00000461743 ARMC9Q7Z3E5 817 aa14.43□□□□□ -0.1
VPS52-213ENST00000461743 ZNF384Q8TF68 577 aa14.43□□□□□ -0.1
VPS52-213ENST00000461743 TEPSINQ96N21 525 aa14.43□□□□□ -0.1
VPS52-213ENST00000461743 IDI2Q9BXS1 227 aa14.43□□□□□ -0.1
VPS52-213ENST00000461743 ECHDC1Q9NTX5 307 aa14.43□□□□□ -0.1
VPS52-213ENST00000461743 MKRN1Q9UHC7 482 aaKnown RBP14.43□□□□□ -0.1
VPS52-213ENST00000461743 TCP10L2B9ZVM9 353 aa14.42□□□□□ -0.1
VPS52-213ENST00000461743 PPP1R12BO60237 982 aaPredicted RBP14.42□□□□□ -0.1
VPS52-213ENST00000461743 SMARCA5O60264 1052 aaPredicted RBP14.42□□□□□ -0.1
VPS52-213ENST00000461743 ENTPD3O75355 529 aa14.42□□□□□ -0.1
VPS52-213ENST00000461743 BAG3O95817 575 aa14.42□□□□□ -0.1
VPS52-213ENST00000461743 RGMBQ6NW40 437 aa14.42□□□□□ -0.1
VPS52-213ENST00000461743 DLK2Q6UY11 383 aa14.42□□□□□ -0.1
VPS52-213ENST00000461743 SMC5Q8IY18 1101 aa14.42□□□□□ -0.1
VPS52-213ENST00000461743 FAM151AQ8WW52 585 aa14.42□□□□□ -0.1
VPS52-213ENST00000461743 CAPNS2Q96L46 248 aa14.42□□□□□ -0.1
VPS52-213ENST00000461743 HAUS7Q99871 368 aa14.42□□□□□ -0.1
VPS52-213ENST00000461743 PIH1D3Q9NQM4 214 aaKnown RBP14.42□□□□□ -0.1
VPS52-213ENST00000461743 SCAF8Q9UPN6 1271 aaKnown RBP14.42□□□□□ -0.1
VPS52-213ENST00000461743 WDR33Q9C0J8 1336 aaKnown RBP14.41□□□□□ -0.1
VPS52-213ENST00000461743 PTPRFP10586 1907 aa14.41□□□□□ -0.1
VPS52-213ENST00000461743 IDH1O75874 414 aaKnown RBP14.41□□□□□ -0.1
VPS52-213ENST00000461743 VEGFBP49765 207 aa14.41□□□□□ -0.1
VPS52-213ENST00000461743 PPP4CP60510 307 aa14.41□□□□□ -0.1
VPS52-213ENST00000461743 CCDC102AQ96A19 550 aa14.41□□□□□ -0.1
VPS52-213ENST00000461743 TMEM39BQ9GZU3 492 aa14.41□□□□□ -0.1
VPS52-213ENST00000461743 USP40Q9NVE5 1235 aa14.41□□□□□ -0.1
VPS52-213ENST00000461743 PAG1Q9NWQ8 432 aa14.41□□□□□ -0.1
VPS52-213ENST00000461743 ATRNL1Q5VV63 1379 aa14.41□□□□□ -0.1
VPS52-213ENST00000461743 BAZ2AQ9UIF9 1905 aaKnown RBP14.41□□□□□ -0.1
VPS52-213ENST00000461743 ERC2O15083 957 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 SLC10A3P09131 477 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 MAP2K2P36507 400 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 IREB2P48200 963 aaKnown RBP14.4□□□□□ -0.1
VPS52-213ENST00000461743 CACNB3P54284 484 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 RHBDL3P58872 404 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 NOGQ13253 232 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 TTLL12Q14166 644 aaPredicted RBP14.4□□□□□ -0.1
VPS52-213ENST00000461743 NBPF12Q5TAG4 269 aaPredicted RBP14.4□□□□□ -0.1
VPS52-213ENST00000461743 PRAMEF18Q5VWM3 479 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 DCAF15Q66K64 600 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 PAXIP1Q6ZW49 1069 aaPredicted RBP14.4□□□□□ -0.1
VPS52-213ENST00000461743 DNAJC2Q99543 621 aaKnown RBP14.4□□□□□ -0.1
VPS52-213ENST00000461743 FAM198AQ9UFP1 575 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 PHIPQ8WWQ0 1821 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 SALL3Q9BXA9 1300 aa14.4□□□□□ -0.1
VPS52-213ENST00000461743 GOLIM4O00461 696 aa14.39□□□□□ -0.11
VPS52-213ENST00000461743 WDHD1O75717 1129 aaPredicted RBP14.39□□□□□ -0.11
VPS52-213ENST00000461743 MX1P20591 662 aa14.39□□□□□ -0.11
VPS52-213ENST00000461743 NFIAQ12857 509 aa14.39□□□□□ -0.11
VPS52-213ENST00000461743 LDLRAD1Q5T700 205 aa14.39□□□□□ -0.11
VPS52-213ENST00000461743 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.39□□□□□ -0.113e-7■■■■□ 22.2
VPS52-213ENST00000461743 ANTXR1Q9H6X2 564 aa14.39□□□□□ -0.11
VPS52-213ENST00000461743 GLRX3O76003 335 aaKnown RBP14.38□□□□□ -0.11
VPS52-213ENST00000461743 RGS3P49796 1198 aa14.38□□□□□ -0.11
VPS52-213ENST00000461743 ZNF157P51786 506 aaPredicted RBP14.38□□□□□ -0.11
VPS52-213ENST00000461743 CYP4F22Q6NT55 531 aa14.38□□□□□ -0.11
VPS52-213ENST00000461743 RASAL3Q86YV0 1011 aa14.38□□□□□ -0.11
VPS52-213ENST00000461743 REM2Q8IYK8 340 aaPredicted RBP14.38□□□□□ -0.11
VPS52-213ENST00000461743 MAGEB6Q8N7X4 407 aa14.38□□□□□ -0.11
VPS52-213ENST00000461743 BOLA2Q9H3K6 86 aa14.38□□□□□ -0.11
VPS52-213ENST00000461743 ANGEL1Q9UNK9 670 aaKnown RBP14.38□□□□□ -0.11
VPS52-213ENST00000461743 NDUFB9Q9Y6M9 179 aa14.38□□□□□ -0.11
VPS52-213ENST00000461743 PDE6AP16499 860 aa14.37□□□□□ -0.11
VPS52-213ENST00000461743 CYP7A1P22680 504 aa14.37□□□□□ -0.11
VPS52-213ENST00000461743 ANKRD45Q5TZF3 282 aa14.37□□□□□ -0.11
VPS52-213ENST00000461743 ZSCAN25Q6NSZ9 544 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms