RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	RASAL3	Q86YV0	1011 aa		10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	VGLL2	Q8N8G2	317 aa		10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	FBXO22	Q8NEZ5	403 aa		10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	CLUAP1	Q96AJ1	413 aa		10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	ZBED3	Q96IU2	234 aa	Predicted RBP	10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	COL1A1	P02452	1464 aa	Predicted RBP	10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	MYO1B	O43795	1136 aa		10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	MMP14	P50281	582 aa		10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	FKBP1A	P62942	108 aa	Known RBP	10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	PTPN12	Q05209	780 aa	Known RBP	10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	PUM3	Q15397	648 aa	Known RBP	10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	GRIK5	Q16478	980 aa		10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	FBXO33	Q7Z6M2	555 aa		10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	PRMT6	Q96LA8	375 aa	Predicted RBP	10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	DEFB129	Q9H1M3	183 aa		10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	PA2G4	Q9UQ80	394 aa	Known RBP	10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	SSC5D	A1L4H1	1573 aa		10.82	□□□□□ -0.68
RFX3-209	ENST00000451859	MYO5A	Q9Y4I1	1855 aa	Known RBP	10.81	□□□□□ -0.68
RFX3-209	ENST00000451859	LAMB1	P07942	1786 aa		10.81	□□□□□ -0.68
RFX3-209	ENST00000451859	SLC5A1	P13866	664 aa		10.81	□□□□□ -0.68
RFX3-209	ENST00000451859	TRIM27	P14373	513 aa		10.81	□□□□□ -0.68
RFX3-209	ENST00000451859	PBX2	P40425	430 aa		10.81	□□□□□ -0.68
RFX3-209	ENST00000451859	FKBP1B	P68106	108 aa		10.81	□□□□□ -0.68
RFX3-209	ENST00000451859	ATG9A	Q7Z3C6	839 aa		10.81	□□□□□ -0.68
RFX3-209	ENST00000451859	ARMC9	Q7Z3E5	817 aa		10.81	□□□□□ -0.68
RFX3-209	ENST00000451859	TDRD3	Q9H7E2	651 aa	Known RBP	10.81	□□□□□ -0.68
RFX3-209	ENST00000451859	ANGEL1	Q9UNK9	670 aa	Known RBP	10.81	□□□□□ -0.68
RFX3-209	ENST00000451859	IPO8	O15397	1037 aa	Known RBP	10.8	□□□□□ -0.68
RFX3-209	ENST00000451859	CA12	O43570	354 aa		10.8	□□□□□ -0.68
RFX3-209	ENST00000451859	TRPA1	O75762	1119 aa		10.8	□□□□□ -0.68
RFX3-209	ENST00000451859	CRK	P46108	304 aa		10.8	□□□□□ -0.68
RFX3-209	ENST00000451859	ATP2B3	Q16720	1220 aa		10.8	□□□□□ -0.68
RFX3-209	ENST00000451859	INTS3	Q68E01	1043 aa	Known RBP	10.8	□□□□□ -0.68
RFX3-209	ENST00000451859	MTMR14	Q8NCE2	650 aa		10.8	□□□□□ -0.68
RFX3-209	ENST00000451859	CSRNP1	Q96S65	589 aa		10.8	□□□□□ -0.68
RFX3-209	ENST00000451859	DOCK2	Q92608	1830 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	TCP10L2	B9ZVM9	353 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	NUDT7	P0C024	238 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	FGFR2	P21802	821 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	RASA3	Q14644	834 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	NBPF12	Q5TAG4	269 aa	Predicted RBP	10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	ATF7IP	Q6VMQ6	1270 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	DZIP1L	Q8IYY4	767 aa	Known RBP	10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	TBC1D22A	Q8WUA7	517 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	LPIN2	Q92539	896 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	ARHGAP45	Q92619	1136 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	RNF186	Q9NXI6	227 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	PLA2G2E	Q9NZK7	142 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	CEP126	Q9P2H0	1117 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	ZNF70	Q9UC06	446 aa	Predicted RBP	10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	HDAC5	Q9UQL6	1122 aa		10.79	□□□□□ -0.68
RFX3-209	ENST00000451859	SRGAP3	O43295	1099 aa		10.78	□□□□□ -0.68
RFX3-209	ENST00000451859	GNAI3	P08754	354 aa		10.78	□□□□□ -0.68
RFX3-209	ENST00000451859	ADORA1	P30542	326 aa		10.78	□□□□□ -0.68
RFX3-209	ENST00000451859	CACNB3	P54284	484 aa		10.78	□□□□□ -0.68
RFX3-209	ENST00000451859	SERPINA10	Q9UK55	444 aa		10.78	□□□□□ -0.68
RFX3-209	ENST00000451859	PPP1R12B	O60237	982 aa	Predicted RBP	10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	CIAO1	O76071	339 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	IL15	P40933	162 aa	Predicted RBP	10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	PHKA1	P46020	1223 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	TNFAIP1	Q13829	316 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	ZKSCAN2	Q63HK3	967 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	TMEM57	Q8N5G2	664 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	TEKT1	Q969V4	418 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	ABHD8	Q96I13	439 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	CLMN	Q96JQ2	1002 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	TMEM39B	Q9GZU3	492 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	LHX6	Q9UPM6	363 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	PPP2R3B	Q9Y5P8	575 aa		10.77	□□□□□ -0.69
RFX3-209	ENST00000451859	C2orf72	A6NCS6	295 aa		10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	GNAI2	P04899	355 aa		10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	DGKZ	Q13574	1117 aa		10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	SUPT20HL1	Q3ZLR7	823 aa		10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	FTSJ3	Q8IY81	847 aa	Known RBP	10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	SLC10A4	Q96EP9	437 aa		10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	C1orf115	Q9H7X2	142 aa		10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	COPRS	Q9NQ92	184 aa		10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	SAGE1	Q9NXZ1	904 aa		10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	TMOD2	Q9NZR1	351 aa		10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	CDK5RAP2	Q96SN8	1893 aa		10.76	□□□□□ -0.69
RFX3-209	ENST00000451859	PNMA6E	A0A0J9YXQ4	647 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	CCDC85C	A6NKD9	419 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	IREB2	P48200	963 aa	Known RBP	10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	TNNI2	P48788	182 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	TIMM10	P62072	90 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	TFCP2	Q12800	502 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	DIXDC1	Q155Q3	683 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	LDLRAD1	Q5T700	205 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	WDR66	Q8TBY9	1149 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	MCOLN1	Q9GZU1	580 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	GNL3L	Q9NVN8	582 aa	Known RBP	10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	MAST3	O60307	1309 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859	ZBED9	Q6R2W3	1325 aa		10.75	□□□□□ -0.69
RFX3-209	ENST00000451859		A0A1B0GUL7	405 aa		10.74	□□□□□ -0.69
RFX3-209	ENST00000451859	USP2	O75604	605 aa	Predicted RBP	10.74	□□□□□ -0.69
RFX3-209	ENST00000451859	TBC1D8	O95759	1140 aa		10.74	□□□□□ -0.69
RFX3-209	ENST00000451859	PRDX5	P30044	214 aa		10.74	□□□□□ -0.69
RFX3-209	ENST00000451859	HDLBP	Q00341	1268 aa	Known RBP	10.74	□□□□□ -0.69
RFX3-209	ENST00000451859	SREBF2	Q12772	1141 aa		10.74	□□□□□ -0.69
RFX3-209	ENST00000451859	SPRYD7	Q5W111	196 aa		10.74	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms