RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 FOXO4P98177 505 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 KIF23Q02241 960 aaPredicted RBP13.62□□□□□ -0.23
MSH6-204ENST00000445503 WTAPQ15007 396 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 KMT5BQ4FZB7 885 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 DESI2Q9BSY9 194 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.62□□□□□ -0.233e-7■■■□□ 17.8
MSH6-204ENST00000445503 UTYO14607 1347 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 A0A1W2PQ27 194 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 A0A1W2PQ64 194 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 A0A1W2PQD8 194 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 KIF28PB7ZC32 967 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 TTF1Q15361 905 aaPredicted RBP13.62□□□□□ -0.23
MSH6-204ENST00000445503 NFE2L3Q9Y4A8 694 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 PCDHA5Q9Y5H7 936 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 SLC4A4Q9Y6R1 1079 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 BTBD18B2RXH4 712 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 IRS4O14654 1257 aaPredicted RBP13.61□□□□□ -0.23
MSH6-204ENST00000445503 DIS3L2Q8IYB7 885 aaKnown RBP13.61□□□□□ -0.23
MSH6-204ENST00000445503 KRI1Q8N9T8 703 aaKnown RBP13.61□□□□□ -0.23
MSH6-204ENST00000445503 STAMQ92783 540 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 BAG1Q99933 345 aaPredicted RBP13.61□□□□□ -0.23
MSH6-204ENST00000445503 BRMS1Q9HCU9 246 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 CABP5Q9NP86 173 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 KIF20AO95235 890 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 CCZ1BP86790 482 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 CCZ1P86791 482 aaPredicted RBP13.61□□□□□ -0.23
MSH6-204ENST00000445503 RNF216Q9NWF9 866 aaPredicted RBP13.61□□□□□ -0.23
MSH6-204ENST00000445503 PUF60Q9UHX1 559 aaKnown RBP13.61□□□□□ -0.23
MSH6-204ENST00000445503 CTIFO43310 598 aaKnown RBP13.61□□□□□ -0.23
MSH6-204ENST00000445503 DENND2AQ9ULE3 1009 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 COL15A1P39059 1388 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 SNAP23O00161 211 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 ETF1P62495 437 aaKnown RBP13.61□□□□□ -0.23
MSH6-204ENST00000445503 RABL6Q3YEC7 729 aaPredicted RBP13.61□□□□□ -0.23
MSH6-204ENST00000445503 GRAMD1CQ8IYS0 662 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 POLR3EQ9NVU0 708 aa13.61□□□□□ -0.23
MSH6-204ENST00000445503 ST7Q9NRC1 585 aa13.6□□□□□ -0.23
MSH6-204ENST00000445503 TCIRG1Q13488 830 aa13.6□□□□□ -0.23
MSH6-204ENST00000445503 SLC39A14Q15043 492 aa13.6□□□□□ -0.23
MSH6-204ENST00000445503 ARMCX5Q6P1M9 558 aa13.6□□□□□ -0.23
MSH6-204ENST00000445503 PRDM4Q9UKN5 801 aa13.6□□□□□ -0.23
MSH6-204ENST00000445503 COBLO75128 1261 aa13.6□□□□□ -0.23
MSH6-204ENST00000445503 RBM43Q6ZSC3 357 aaKnown RBP13.6□□□□□ -0.23
MSH6-204ENST00000445503 GOLGA6L1Q8N7Z2 621 aa13.6□□□□□ -0.23
MSH6-204ENST00000445503 ENGASEQ8NFI3 743 aa13.6□□□□□ -0.23
MSH6-204ENST00000445503 GREM2Q9H772 168 aa13.6□□□□□ -0.23
MSH6-204ENST00000445503 SERTAD1Q9UHV2 236 aa13.6□□□□□ -0.23
MSH6-204ENST00000445503 TMEM232C9JQI7 657 aa13.59□□□□□ -0.23
MSH6-204ENST00000445503 SLC5A1P13866 664 aa13.59□□□□□ -0.23
MSH6-204ENST00000445503 RBM6P78332 1123 aaKnown RBP13.59□□□□□ -0.23
MSH6-204ENST00000445503 UTP14CQ5TAP6 766 aaKnown RBP13.59□□□□□ -0.23
MSH6-204ENST00000445503 EPC1Q9H2F5 836 aa13.59□□□□□ -0.23
MSH6-204ENST00000445503 WDHD1O75717 1129 aaPredicted RBP13.59□□□□□ -0.23
MSH6-204ENST00000445503 PHKA1P46020 1223 aa13.59□□□□□ -0.23
MSH6-204ENST00000445503 MCM6Q14566 821 aa13.59□□□□□ -0.23
MSH6-204ENST00000445503 LONRF3Q496Y0 759 aa13.59□□□□□ -0.23
MSH6-204ENST00000445503 DDX41Q9UJV9 622 aaKnown RBP13.59□□□□□ -0.23
MSH6-204ENST00000445503 KIF5CO60282 957 aa13.59□□□□□ -0.23
MSH6-204ENST00000445503 DPF2Q92785 391 aa13.59□□□□□ -0.23
MSH6-204ENST00000445503 SEC31AO94979 1220 aaKnown RBP13.58□□□□□ -0.23
MSH6-204ENST00000445503 E4F1Q66K89 784 aaPredicted RBP13.58□□□□□ -0.23
MSH6-204ENST00000445503 APOA5Q6Q788 366 aa13.58□□□□□ -0.23
MSH6-204ENST00000445503 CEP131Q9UPN4 1083 aa13.58□□□□□ -0.23
MSH6-204ENST00000445503 CCDC196A0A1B0GTZ2 297 aa13.58□□□□□ -0.24
MSH6-204ENST00000445503 IL2RBP14784 551 aa13.58□□□□□ -0.24
MSH6-204ENST00000445503 HSP90B2PQ58FF3 399 aa13.58□□□□□ -0.24
MSH6-204ENST00000445503 BICDL1Q6ZP65 573 aa13.58□□□□□ -0.24
MSH6-204ENST00000445503 PRDM1O75626 825 aa13.58□□□□□ -0.24
MSH6-204ENST00000445503 GABPB1Q06547 395 aaPredicted RBP13.58□□□□□ -0.24
MSH6-204ENST00000445503 KLHL34Q8N239 644 aa13.58□□□□□ -0.24
MSH6-204ENST00000445503 GPR108Q9NPR9 543 aa13.58□□□□□ -0.24
MSH6-204ENST00000445503 NCAPD2Q15021 1401 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 FOXN1O15353 648 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 PDE6AP16499 860 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 AEBP2Q6ZN18 517 aaPredicted RBP13.57□□□□□ -0.24
MSH6-204ENST00000445503 WWC3Q9ULE0 1092 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 NRXN3Q9Y4C0 1643 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 CUTAO60888 179 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 IPO7O95373 1038 aaKnown RBP13.57□□□□□ -0.24
MSH6-204ENST00000445503 CYP7A1P22680 504 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 CYB5R4Q7L1T6 521 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 CCDC102AQ96A19 550 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 NUP88Q99567 741 aaPredicted RBP13.57□□□□□ -0.24
MSH6-204ENST00000445503 IGHMBP2P38935 993 aaKnown RBP13.57□□□□□ -0.24
MSH6-204ENST00000445503 CCT6AP40227 531 aaKnown RBP13.57□□□□□ -0.24
MSH6-204ENST00000445503 POSTNQ15063 836 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 KRBA2Q6ZNG9 492 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 TBC1D10CQ8IV04 446 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 ARFGAP3Q9NP61 516 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 MAPK8IP1Q9UQF2 711 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 UBE2Q2LH0YL09 131 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 N4BP3O15049 544 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 UQCRFS1P1P0C7P4 283 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 SENP2Q9HC62 589 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 ASAP1Q9ULH1 1129 aa13.57□□□□□ -0.24
MSH6-204ENST00000445503 ZMYM6O95789 1325 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 PCDH11XQ9BZA7 1347 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 PCDH11YQ9BZA8 1340 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 MCAMP43121 646 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 PPP2R3AQ06190 1150 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms