RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 MSL1Q68DK7 614 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 CC2D1AQ6P1N0 951 aaPredicted RBP7.39□□□□□ -1.23
MCF2-205ENST00000437564 ATF7IPQ6VMQ6 1270 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 ILDR1Q86SU0 546 aaPredicted RBP7.39□□□□□ -1.23
MCF2-205ENST00000437564 GALNT15Q8N3T1 639 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 SREK1Q8WXA9 508 aaKnown RBP7.39□□□□□ -1.23
MCF2-205ENST00000437564 TMEM106CQ9BVX2 250 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 PAPOLBQ9NRJ5 636 aaKnown RBP7.39□□□□□ -1.23
MCF2-205ENST00000437564 SLAIN2Q9P270 581 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 SCINQ9Y6U3 715 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 LRPPRCP42704 1394 aaKnown RBP7.38□□□□□ -1.23
MCF2-205ENST00000437564 ENO4A6NNW6 628 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 GNPATO15228 680 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 TBC1D12O60347 775 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 MBD4O95243 580 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 PENKP01210 267 aaPredicted RBP7.38□□□□□ -1.23
MCF2-205ENST00000437564 ERCC5P28715 1186 aaPredicted RBP7.38□□□□□ -1.23
MCF2-205ENST00000437564 TCF7P36402 384 aaPredicted RBP7.38□□□□□ -1.23
MCF2-205ENST00000437564 ZNF131P52739 623 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 ATN1P54259 1190 aaPredicted RBP7.38□□□□□ -1.23
MCF2-205ENST00000437564 PHEXP78562 749 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 PLCB4Q15147 1175 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 USH1GQ495M9 461 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.38□□□□□ -1.23
MCF2-205ENST00000437564 SPDYCQ5MJ68 293 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 CCDC122Q5T0U0 273 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 AGAP9Q5VTM2 703 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 SAMD14Q8IZD0 417 aaPredicted RBP7.38□□□□□ -1.23
MCF2-205ENST00000437564 C17orf53Q8N3J3 647 aaPredicted RBP7.38□□□□□ -1.23
MCF2-205ENST00000437564 CENPTQ96BT3 561 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 CEP63Q96MT8 703 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 ZMAT2Q96NC0 199 aaKnown RBP7.38□□□□□ -1.23
MCF2-205ENST00000437564 TANGO6Q9C0B7 1094 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 MRPL46Q9H2W6 279 aaKnown RBP7.38□□□□□ -1.23
MCF2-205ENST00000437564 ACAD8Q9UKU7 415 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 EXOC6BQ9Y2D4 811 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 RTEL1-TNFRSF6BF6WH68 1400 aa7.38□□□□□ -1.23
MCF2-205ENST00000437564 TARSL2A2RTX5 802 aaKnown RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 GRXCR2A6NFK2 248 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 FSBPO95073 299 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 PARNO95453 639 aaKnown RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 IL4RP24394 825 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 CCNCP24863 283 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 MATR3P43243 847 aaKnown RBP eCLIP7.37□□□□□ -1.23
MCF2-205ENST00000437564 RASSF7Q02833 373 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 BTG3Q14201 252 aaPredicted RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 NAA30Q147X3 362 aaPredicted RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 DUSP27Q5VZP5 1158 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 THOC7Q6I9Y2 204 aaKnown RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 GIGYF2Q6Y7W6 1299 aaKnown RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 WAPLQ7Z5K2 1190 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 TRIM58Q8NG06 486 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 GOLGA1Q92805 767 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 NAF1Q96HR8 494 aaKnown RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 MAML3Q96JK9 1138 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 CDCA7Q9BWT1 371 aaPredicted RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 SYNCQ9H7C4 482 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 PYCARDQ9ULZ3 195 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 PHF24Q9UPV7 400 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 FAN1Q9Y2M0 1017 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 POLA1P09884 1462 aaPredicted RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 KIF27Q86VH2 1401 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 ZMYM4Q5VZL5 1548 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 SCAF11Q99590 1463 aaKnown RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 GOLGA6L10A0A0M3HER8 536 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 P4HA2O15460 535 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 TTI1O43156 1089 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 TROVE2P10155 538 aaKnown RBP eCLIP7.37□□□□□ -1.23
MCF2-205ENST00000437564 GBP2P32456 591 aaPredicted RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 TUBA1BP68363 451 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 CTAG1AP78358 180 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 SUZ12Q15022 739 aaKnown RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 SMUG1Q53HV7 270 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 THEMIS2Q5TEJ8 643 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 MIS18BP1Q6P0N0 1132 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 NEK10Q6ZWH5 1172 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 TUBA1AQ71U36 451 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 PLPP6Q8IY26 295 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 CHCHD4Q8N4Q1 142 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 CTNNBL1Q8WYA6 563 aaPredicted RBP7.37□□□□□ -1.23
MCF2-205ENST00000437564 VTI1AQ96AJ9 217 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 GCC1Q96CN9 775 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 XAGE2Q96GT9 111 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 ZWILCHQ9H900 591 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 SEPT10Q9P0V9 454 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 CFAP45Q9UL16 551 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 SPO11Q9Y5K1 396 aa7.37□□□□□ -1.23
MCF2-205ENST00000437564 SYCE3A1L190 88 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 ATP9BO43861 1147 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 ZEB2O60315 1214 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 FGFR1OPO95684 399 aaKnown RBP7.36□□□□□ -1.23
MCF2-205ENST00000437564 BCRP11274 1271 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 OSBPP22059 807 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 FOXK1P85037 733 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 COX10Q12887 443 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 INAQ16352 499 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 BOLA3Q53S33 107 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 SH2D4BQ5SQS7 431 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 FBXW10Q5XX13 1052 aa7.36□□□□□ -1.23
MCF2-205ENST00000437564 CCDC174Q6PII3 467 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms