RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 SUPT20HL1Q3ZLR7 823 aa14□□□□□ -0.17
COL28A1-203ENST00000435823 APOBEC3HQ6NTF7 200 aaKnown RBP14□□□□□ -0.17
COL28A1-203ENST00000435823 JMYQ8N9B5 988 aa14□□□□□ -0.17
COL28A1-203ENST00000435823 SPDYE1Q8NFV5 336 aaPredicted RBP14□□□□□ -0.17
COL28A1-203ENST00000435823 DCTPP1Q9H773 170 aa14□□□□□ -0.17
COL28A1-203ENST00000435823 SNRKQ9NRH2 765 aa14□□□□□ -0.17
COL28A1-203ENST00000435823 RAI14Q9P0K7 980 aa14□□□□□ -0.17
COL28A1-203ENST00000435823 LRP2BPQ9P2M1 347 aa14□□□□□ -0.17
COL28A1-203ENST00000435823 DAGLAQ9Y4D2 1042 aa14□□□□□ -0.17
COL28A1-203ENST00000435823 PCDHB15Q9Y5E8 787 aa14□□□□□ -0.17
COL28A1-203ENST00000435823 PAPPA2Q9BXP8 1791 aa13.99□□□□□ -0.17
COL28A1-203ENST00000435823 WDR33Q9C0J8 1336 aaKnown RBP13.99□□□□□ -0.17
COL28A1-203ENST00000435823 TCP10L2B9ZVM9 353 aa13.99□□□□□ -0.17
COL28A1-203ENST00000435823 LDHCP07864 332 aa13.99□□□□□ -0.17
COL28A1-203ENST00000435823 GRM1Q13255 1194 aa13.99□□□□□ -0.17
COL28A1-203ENST00000435823 RASA3Q14644 834 aa13.99□□□□□ -0.17
COL28A1-203ENST00000435823 CYP4F22Q6NT55 531 aa13.99□□□□□ -0.17
COL28A1-203ENST00000435823 TBC1D9Q6ZT07 1266 aa13.99□□□□□ -0.17
COL28A1-203ENST00000435823 CAPNS2Q96L46 248 aa13.99□□□□□ -0.17
COL28A1-203ENST00000435823 MYH2Q9UKX2 1941 aa13.98□□□□□ -0.17
COL28A1-203ENST00000435823 IGSF3O75054 1194 aa13.98□□□□□ -0.17
COL28A1-203ENST00000435823 ZAP70P43403 619 aa13.98□□□□□ -0.17
COL28A1-203ENST00000435823 MECOMQ03112 1051 aa13.98□□□□□ -0.17
COL28A1-203ENST00000435823 FKBP1CQ5VVH2 108 aa13.98□□□□□ -0.17
COL28A1-203ENST00000435823 FAM163AQ96GL9 167 aaPredicted RBP13.98□□□□□ -0.17
COL28A1-203ENST00000435823 AKAP11Q9UKA4 1901 aa13.98□□□□□ -0.17
COL28A1-203ENST00000435823 MROH7-TTC4A0A0A0MT08 1334 aa13.97□□□□□ -0.17
COL28A1-203ENST00000435823 GAKO14976 1311 aa13.97□□□□□ -0.17
COL28A1-203ENST00000435823 PPP1R12BO60237 982 aaPredicted RBP13.97□□□□□ -0.17
COL28A1-203ENST00000435823 CYP2E1P05181 493 aaPredicted RBP13.97□□□□□ -0.17
COL28A1-203ENST00000435823 CACNB3P54284 484 aa13.97□□□□□ -0.17
COL28A1-203ENST00000435823 RGMBQ6NW40 437 aa13.97□□□□□ -0.17
COL28A1-203ENST00000435823 CDC42EP5Q6NZY7 148 aa13.97□□□□□ -0.17
COL28A1-203ENST00000435823 ARMC9Q7Z3E5 817 aa13.97□□□□□ -0.17
COL28A1-203ENST00000435823 FAM83AQ86UY5 434 aa13.97□□□□□ -0.17
COL28A1-203ENST00000435823 NOL10Q9BSC4 688 aaKnown RBP13.97□□□□□ -0.17
COL28A1-203ENST00000435823 USP40Q9NVE5 1235 aa13.97□□□□□ -0.17
COL28A1-203ENST00000435823 SMARCA5O60264 1052 aaPredicted RBP13.96□□□□□ -0.17
COL28A1-203ENST00000435823 BTDP43251 543 aa13.96□□□□□ -0.17
COL28A1-203ENST00000435823 ZNF157P51786 506 aaPredicted RBP13.96□□□□□ -0.17
COL28A1-203ENST00000435823 PRKG1Q13976 671 aa13.96□□□□□ -0.17
COL28A1-203ENST00000435823 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.96□□□□□ -0.17
COL28A1-203ENST00000435823 CCDC102AQ96A19 550 aa13.96□□□□□ -0.17
COL28A1-203ENST00000435823 NSUN4Q96CB9 384 aaKnown RBP13.96□□□□□ -0.17
COL28A1-203ENST00000435823 TMEM39BQ9GZU3 492 aa13.96□□□□□ -0.17
COL28A1-203ENST00000435823 ZBTB47Q9UFB7 747 aaPredicted RBP13.96□□□□□ -0.17
COL28A1-203ENST00000435823 ANGEL1Q9UNK9 670 aaKnown RBP13.96□□□□□ -0.17
COL28A1-203ENST00000435823 UBE2Q2LH0YL09 131 aa13.95□□□□□ -0.18
COL28A1-203ENST00000435823 TTF1Q15361 905 aaPredicted RBP13.95□□□□□ -0.18
COL28A1-203ENST00000435823 NBPF12Q5TAG4 269 aaPredicted RBP13.95□□□□□ -0.18
COL28A1-203ENST00000435823 NAA16Q6N069 864 aaPredicted RBP13.95□□□□□ -0.18
COL28A1-203ENST00000435823 MOB2Q70IA6 237 aa13.95□□□□□ -0.18
COL28A1-203ENST00000435823 HOOK2Q96ED9 719 aa13.95□□□□□ -0.18
COL28A1-203ENST00000435823 GPATCH3Q96I76 525 aa13.95□□□□□ -0.18
COL28A1-203ENST00000435823 MAST2Q6P0Q8 1798 aa13.95□□□□□ -0.18
COL28A1-203ENST00000435823 GPR75-ASB3A0A0A6YYF3 556 aa13.94□□□□□ -0.18
COL28A1-203ENST00000435823 IDH1O75874 414 aaKnown RBP13.94□□□□□ -0.18
COL28A1-203ENST00000435823 MAP4K4O95819 1239 aaPredicted RBP13.94□□□□□ -0.18
COL28A1-203ENST00000435823 MAP2K2P36507 400 aa13.94□□□□□ -0.18
COL28A1-203ENST00000435823 IREB2P48200 963 aaKnown RBP13.94□□□□□ -0.18
COL28A1-203ENST00000435823 NOGQ13253 232 aa13.94□□□□□ -0.18
COL28A1-203ENST00000435823 HDAC1Q13547 482 aaPredicted RBP13.94□□□□□ -0.18
COL28A1-203ENST00000435823 EXOC6Q8TAG9 804 aa13.94□□□□□ -0.18
COL28A1-203ENST00000435823 FAM151AQ8WW52 585 aa13.94□□□□□ -0.18
COL28A1-203ENST00000435823 TEPSINQ96N21 525 aa13.94□□□□□ -0.18
COL28A1-203ENST00000435823 PIH1D3Q9NQM4 214 aaKnown RBP13.94□□□□□ -0.18
COL28A1-203ENST00000435823 RPAP1Q9BWH6 1393 aaPredicted RBP13.94□□□□□ -0.18
COL28A1-203ENST00000435823 SSC5DA1L4H1 1573 aa13.93□□□□□ -0.18
COL28A1-203ENST00000435823 BAG3O95817 575 aa13.93□□□□□ -0.18
COL28A1-203ENST00000435823 ATP5JP18859 108 aa13.93□□□□□ -0.18
COL28A1-203ENST00000435823 MAP2K1Q02750 393 aaPredicted RBP13.93□□□□□ -0.18
COL28A1-203ENST00000435823 MAP3K12Q12852 859 aa13.93□□□□□ -0.18
COL28A1-203ENST00000435823 MAP3K11Q16584 847 aa13.93□□□□□ -0.18
COL28A1-203ENST00000435823 TMED8Q6PL24 325 aaPredicted RBP13.93□□□□□ -0.18
COL28A1-203ENST00000435823 ZNF384Q8TF68 577 aa13.93□□□□□ -0.18
COL28A1-203ENST00000435823 GCC1Q96CN9 775 aa13.93□□□□□ -0.18
COL28A1-203ENST00000435823 DNAJC2Q99543 621 aaKnown RBP13.93□□□□□ -0.18
COL28A1-203ENST00000435823 IDI2Q9BXS1 227 aa13.93□□□□□ -0.18
COL28A1-203ENST00000435823 RWDD1Q9H446 243 aaPredicted RBP13.93□□□□□ -0.18
COL28A1-203ENST00000435823 NDUFB9Q9Y6M9 179 aa13.93□□□□□ -0.18
COL28A1-203ENST00000435823 UNCXA6NJT0 531 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 AOC2O75106 756 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 ENTPD3O75355 529 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 SLC10A3P09131 477 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 PLCG2P16885 1265 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 TCP10Q12799 353 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 NFIAQ12857 509 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 AIDAQ96BJ3 306 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 BOLA2Q9H3K6 86 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 ANTXR1Q9H6X2 564 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 ECHDC1Q9NTX5 307 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 FAM198AQ9UFP1 575 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 FZD1Q9UP38 647 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 THSD7BQ9C0I4 1608 aa13.92□□□□□ -0.18
COL28A1-203ENST00000435823 GOLIM4O00461 696 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 USP2O75604 605 aaPredicted RBP13.91□□□□□ -0.18
COL28A1-203ENST00000435823 HSPA1AP0DMV8 641 aaKnown RBP13.91□□□□□ -0.18
COL28A1-203ENST00000435823 HSPA1BP0DMV9 641 aaKnown RBP13.91□□□□□ -0.18
COL28A1-203ENST00000435823 CYP7A1P22680 504 aa13.91□□□□□ -0.18
COL28A1-203ENST00000435823 RGS3P49796 1198 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms