RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 ZNF417Q8TAU3 575 aa8.9□□□□□ -0.98
USP54-206ENST00000433394 ANAPC16Q96DE5 110 aa8.9□□□□□ -0.98
USP54-206ENST00000433394 ZNF587Q96SQ5 575 aaPredicted RBP8.9□□□□□ -0.98
USP54-206ENST00000433394 OSBPL2Q9H1P3 480 aa8.9□□□□□ -0.98
USP54-206ENST00000433394 TMA7Q9Y2S6 64 aaKnown RBP8.9□□□□□ -0.98
USP54-206ENST00000433394 ADAMTS2O95450 1211 aa8.89□□□□□ -0.99
USP54-206ENST00000433394 EIF6P56537 245 aaKnown RBP8.89□□□□□ -0.99
USP54-206ENST00000433394 RPL6Q02878 288 aaKnown RBP8.89□□□□□ -0.99
USP54-206ENST00000433394 PDE3AQ14432 1141 aa8.89□□□□□ -0.99
USP54-206ENST00000433394 CCDC144BQ3MJ40 725 aa8.89□□□□□ -0.99
USP54-206ENST00000433394 OR6P1Q8NGX9 317 aa8.89□□□□□ -0.99
USP54-206ENST00000433394 LRRC4BQ9NT99 713 aa8.89□□□□□ -0.99
USP54-206ENST00000433394 FSCN2O14926 492 aa8.88□□□□□ -0.99
USP54-206ENST00000433394 SMARCA5O60264 1052 aaPredicted RBP8.88□□□□□ -0.99
USP54-206ENST00000433394 CILPO75339 1184 aa8.88□□□□□ -0.99
USP54-206ENST00000433394 ALBP02768 609 aa8.88□□□□□ -0.99
USP54-206ENST00000433394 AFF1P51825 1210 aaKnown RBP8.88□□□□□ -0.99
USP54-206ENST00000433394 MSL1Q68DK7 614 aa8.88□□□□□ -0.99
USP54-206ENST00000433394 CHSY3Q70JA7 882 aa8.88□□□□□ -0.99
USP54-206ENST00000433394 REC114Q7Z4M0 266 aa8.88□□□□□ -0.99
USP54-206ENST00000433394 REXO1Q8N1G1 1221 aaKnown RBP8.88□□□□□ -0.99
USP54-206ENST00000433394 MRFAP1L1Q96HT8 127 aa8.88□□□□□ -0.99
USP54-206ENST00000433394 ZNF408Q9H9D4 720 aa8.88□□□□□ -0.99
USP54-206ENST00000433394 KRT82Q9NSB4 513 aa8.88□□□□□ -0.99
USP54-206ENST00000433394 MRVI1Q9Y6F6 885 aa8.88□□□□□ -0.99
USP54-206ENST00000433394 HMGB1P09429 215 aaKnown RBP8.87□□□□□ -0.99
USP54-206ENST00000433394 CRKP46108 304 aa8.87□□□□□ -0.99
USP54-206ENST00000433394 ZNF252P-AS1Q0IIN9 211 aa8.87□□□□□ -0.99
USP54-206ENST00000433394 TXNDC11Q6PKC3 985 aa8.87□□□□□ -0.99
USP54-206ENST00000433394 HDXQ7Z353 690 aa8.87□□□□□ -0.99
USP54-206ENST00000433394 PCDHA4Q9UN74 947 aa8.87□□□□□ -0.99
USP54-206ENST00000433394 FAM221AA4D161 298 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 SUZ12Q15022 739 aaKnown RBP8.86□□□□□ -0.99
USP54-206ENST00000433394 RNFT1Q5M7Z0 435 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 C20orf204Q6ZNR8 217 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 GK5Q6ZS86 529 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 ANKS3Q6ZW76 656 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 GRIN3AQ8TCU5 1115 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 ACDQ96AP0 544 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 ELMO3Q96BJ8 720 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 USP26Q9BXU7 913 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 SIRPGQ9P1W8 387 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 PRKAG3Q9UGI9 489 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 STARD13Q9Y3M8 1113 aa8.86□□□□□ -0.99
USP54-206ENST00000433394 OIP5O43482 229 aa8.85□□□□□ -0.99
USP54-206ENST00000433394 SLFN14P0C7P3 912 aa8.85□□□□□ -0.99
USP54-206ENST00000433394 BCRP11274 1271 aa8.85□□□□□ -0.99
USP54-206ENST00000433394 MAOBP27338 520 aa8.85□□□□□ -0.99
USP54-206ENST00000433394 LRRFIP1Q32MZ4 808 aaKnown RBP8.85□□□□□ -0.99
USP54-206ENST00000433394 FBXO27Q8NI29 283 aa8.85□□□□□ -0.99
USP54-206ENST00000433394 ZC3H12CQ9C0D7 883 aaKnown RBP8.85□□□□□ -0.99
USP54-206ENST00000433394 BRMS1Q9HCU9 246 aa8.85□□□□□ -0.99
USP54-206ENST00000433394 PRDM6Q9NQX0 595 aa8.85□□□□□ -0.99
USP54-206ENST00000433394 PICK1Q9NRD5 415 aa8.85□□□□□ -0.99
USP54-206ENST00000433394 ENAMQ9NRM1 1142 aa8.85□□□□□ -0.99
USP54-206ENST00000433394 PPT2Q9UMR5 302 aa8.85□□□□□ -0.99
USP54-206ENST00000433394 PIK3R2O00459 728 aa8.84□□□□□ -0.99
USP54-206ENST00000433394 PDE4BQ07343 736 aa8.84□□□□□ -0.99
USP54-206ENST00000433394 GRIK5Q16478 980 aa8.84□□□□□ -0.99
USP54-206ENST00000433394 PDZD3Q86UT5 571 aa8.84□□□□□ -0.99
USP54-206ENST00000433394 FAM177A1Q8N128 213 aaPredicted RBP8.84□□□□□ -0.99
USP54-206ENST00000433394 STK35Q8TDR2 534 aa8.84□□□□□ -0.99
USP54-206ENST00000433394 GAL3ST3Q96A11 431 aa8.84□□□□□ -0.99
USP54-206ENST00000433394 BTBD6Q96KE9 485 aa8.84□□□□□ -0.99
USP54-206ENST00000433394 RAD18Q9NS91 495 aa8.84□□□□□ -0.99
USP54-206ENST00000433394 SNCAIPQ9Y6H5 919 aa8.84□□□□□ -0.99
USP54-206ENST00000433394 WIPF1O43516 503 aa8.83□□□□□ -1
USP54-206ENST00000433394 ETFBP38117 255 aa8.83□□□□□ -1
USP54-206ENST00000433394 BMS1Q14692 1282 aaKnown RBP8.83□□□□□ -1
USP54-206ENST00000433394 ADAMTSL4Q6UY14 1074 aa8.83□□□□□ -1
USP54-206ENST00000433394 CCDC81Q6ZN84 652 aa8.83□□□□□ -1
USP54-206ENST00000433394 DTWD1Q8N5C7 304 aa8.83□□□□□ -1
USP54-206ENST00000433394 GPBAR1Q8TDU6 330 aa8.83□□□□□ -1
USP54-206ENST00000433394 CARD10Q9BWT7 1032 aa8.83□□□□□ -1
USP54-206ENST00000433394 PCDHB14Q9Y5E9 798 aa8.83□□□□□ -1
USP54-206ENST00000433394 SPDYE3A6NKU9 549 aa8.82□□□□□ -1
USP54-206ENST00000433394 K7ELQ4 463 aaPredicted RBP8.82□□□□□ -1
USP54-206ENST00000433394 CLSTN1O94985 981 aa8.82□□□□□ -1
USP54-206ENST00000433394 BAG6P46379 1132 aa8.82□□□□□ -1
USP54-206ENST00000433394 NLRP12P59046 1061 aa8.82□□□□□ -1
USP54-206ENST00000433394 RAC1P63000 192 aa8.82□□□□□ -1
USP54-206ENST00000433394 WIPI1Q5MNZ9 446 aaPredicted RBP8.82□□□□□ -1
USP54-206ENST00000433394 TRAPPC3LQ5T215 181 aa8.82□□□□□ -1
USP54-206ENST00000433394 LCE2CQ5TA81 110 aa8.82□□□□□ -1
USP54-206ENST00000433394 RASIP1Q5U651 963 aa8.82□□□□□ -1
USP54-206ENST00000433394 DMRTC2Q8IXT2 367 aaPredicted RBP8.82□□□□□ -1
USP54-206ENST00000433394 MKL1Q969V6 931 aa8.82□□□□□ -1
USP54-206ENST00000433394 RRAGCQ9HB90 399 aa8.82□□□□□ -1
USP54-206ENST00000433394 ZNRF3Q9ULT6 936 aa8.82□□□□□ -1
USP54-206ENST00000433394 CD68P34810 354 aaPredicted RBP8.81□□□□□ -1
USP54-206ENST00000433394 RAB33AQ14088 237 aa8.81□□□□□ -1
USP54-206ENST00000433394 NEDD1Q8NHV4 660 aa8.81□□□□□ -1
USP54-206ENST00000433394 KLHDC7BQ96G42 594 aa8.81□□□□□ -1
USP54-206ENST00000433394 SRPK1Q96SB4 655 aaKnown RBP8.81□□□□□ -1
USP54-206ENST00000433394 ACTR10Q9NZ32 417 aa8.81□□□□□ -1
USP54-206ENST00000433394 TACC3Q9Y6A5 838 aa8.81□□□□□ -1
USP54-206ENST00000433394 ERBB4Q15303 1308 aa8.8□□□□□ -1
USP54-206ENST00000433394 NCLP19338 710 aaKnown RBP8.8□□□□□ -1
USP54-206ENST00000433394 GIPRP48546 466 aa8.8□□□□□ -1
USP54-206ENST00000433394 INSM1Q01101 510 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms