RNA–Protein interactions for RNA: ENST00000428842.1

HMGCLL1-206, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,437 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-206ENST00000428842 RNF181Q9P0P0 153 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 ZNF646O15015 1829 aaPredicted RBP11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 MAGEB6P1A0A0J9YX57 407 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 GSG1L2A8MUP6 293 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 DDNO94850 711 aaPredicted RBP11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 KIAA1211Q6ZU35 1233 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 PODNQ7Z5L7 613 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 WDR66Q8TBY9 1149 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 TGFBRAP1Q8WUH2 860 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 FZD1Q9UP38 647 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 DAGLAQ9Y4D2 1042 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 SBF1O95248 1867 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 MINDY4BA8MYZ0 360 aa11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 USP17L8P0C7I0 530 aa11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 PRMT6Q96LA8 375 aaPredicted RBP11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 DDX4Q9NQI0 724 aaKnown RBP11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 RAD50Q92878 1312 aa11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 SHROOM1Q2M3G4 852 aaPredicted RBP11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 NBPF9Q3BBW0 867 aa11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 PRAMEF18Q5VWM3 479 aa11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 RAB11FIP4Q86YS3 637 aa11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 JDP2Q8WYK2 163 aa11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 MAP4K1Q92918 833 aa11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 TDRD3Q9H7E2 651 aaKnown RBP11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 ZNRF3Q9ULT6 936 aa11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 SNX14Q9Y5W7 946 aa11.4□□□□□ -0.58
HMGCLL1-206ENST00000428842 SLC27A2O14975 620 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 UBE3CQ15386 1083 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 TBC1D10BQ4KMP7 808 aaPredicted RBP11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 CREB3L3Q68CJ9 461 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 SLC44A5Q8NCS7 719 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 ZNF526Q8TF50 670 aaPredicted RBP11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 ARFGEF1Q9Y6D6 1849 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 FAM205AQ6ZU69 1335 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 REC8O95072 547 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 NECTIN1Q15223 517 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 C9orf131Q5VYM1 1079 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 DYNLL2Q96FJ2 89 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 HELLSQ9NRZ9 838 aa11.39□□□□□ -0.59
HMGCLL1-206ENST00000428842 SEMA3EO15041 775 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 CRKP46108 304 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 STRIP1Q5VSL9 837 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 APOBEC3HQ6NTF7 200 aaKnown RBP11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 TBC1D10CQ8IV04 446 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 IFNL3Q8IZI9 196 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 RUFY2Q8WXA3 655 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 UPF2Q9HAU5 1272 aaKnown RBP11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 HSPA4P34932 840 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 GMPSP49915 693 aaPredicted RBP11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 PLCD1P51178 756 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 CC2D2BQ6DHV5 1058 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 JAKMIP1Q96N16 626 aaKnown RBP11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 ZKSCAN3Q9BRR0 538 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 TAOK2Q9UL54 1235 aa11.38□□□□□ -0.59
HMGCLL1-206ENST00000428842 MROH7-TTC4A0A0A0MT08 1334 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 USP17L12C9JPN9 530 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 USP17L21D6R901 530 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 CASTP20810 708 aaKnown RBP11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 EPS15P42566 896 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 TDO2P48775 406 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 RHBDL3P58872 404 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 RRP12Q5JTH9 1297 aaKnown RBP11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 RSBN1LQ6PCB5 846 aaPredicted RBP11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 CDK5RAP2Q96SN8 1893 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 TCP10L2B9ZVM9 353 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 NEK4P51957 841 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 CFAP100Q494V2 611 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 CDC42EP5Q6NZY7 148 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 SUPT20HQ8NEM7 779 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 SENP2Q9HC62 589 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 USP40Q9NVE5 1235 aa11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.37□□□□□ -0.59
HMGCLL1-206ENST00000428842 HIP1O00291 1037 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 ZFYP08048 801 aaPredicted RBP11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 VIL1P09327 827 aaKnown RBP11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 RBM25P49756 843 aaKnown RBP11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 CIAPIN1Q6FI81 312 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 DCP1AQ9NPI6 582 aaPredicted RBP11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 TOMM22Q9NS69 142 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 MCM9Q9NXL9 1143 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 POLR2AP24928 1970 aaKnown RBP11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 NEDD4P46934 1319 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 SALL1Q9NSC2 1324 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 NMT2O60551 498 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 LMNB1P20700 586 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 USP5P45974 858 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 ZSCAN25Q6NSZ9 544 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 CLEC10AQ8IUN9 316 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 MICALL2Q8IY33 904 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 TEX11Q8IYF3 940 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 GMLQ99445 158 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 NAPBQ9H115 298 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 VEZTQ9HBM0 779 aa11.36□□□□□ -0.59
HMGCLL1-206ENST00000428842 WDHD1O75717 1129 aaPredicted RBP11.35□□□□□ -0.59
HMGCLL1-206ENST00000428842 CTR9Q6PD62 1173 aa11.35□□□□□ -0.59
HMGCLL1-206ENST00000428842 TRPM4Q8TD43 1214 aa11.35□□□□□ -0.59
HMGCLL1-206ENST00000428842 DNAH12Q6ZR08 3092 aa11.35□□□□□ -0.59
HMGCLL1-206ENST00000428842 PATL2C9JE40 543 aaKnown RBP11.35□□□□□ -0.59
HMGCLL1-206ENST00000428842 FZD9O00144 591 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms