RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TTC4O95801 387 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 RPL13P26373 211 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 TMTC4Q5T4D3 741 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 CCDC186Q7Z3E2 898 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 KRT23Q9C075 422 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 ANLNQ9NQW6 1124 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 TSPY3P0CV98 308 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 TSPY8P0CW00 308 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 GSTO1P78417 241 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 ZKSCAN5Q9Y2L8 839 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 EEF1DP29692 281 aaKnown RBP14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 TRIM14Q14142 442 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 KIF21BO75037 1637 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 PPFIA3O75145 1194 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 ZSCAN22P10073 491 aaPredicted RBP14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 KRT9P35527 623 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 TRIM55Q9BYV6 548 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 SPDYE3A6NKU9 549 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 PPP2R1AP30153 589 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 LONP1P36776 959 aaKnown RBP14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 GON4LQ3T8J9 2241 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 PHBP35232 272 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 RAPGEF1Q13905 1077 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 MRFAP1L1Q96HT8 127 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 NOX5Q96PH1 765 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 TRIM56Q9BRZ2 755 aaKnown RBP14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 EFCC1Q9HA90 598 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 AKR1B15C9JRZ8 316 aaPredicted RBP14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 DUSP27Q5VZP5 1158 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 PARP2Q9UGN5 583 aa14.84□□□□□ -0.03
CCDC88A-204ENST00000413716 KCNA4P22459 653 aa14.83□□□□□ -0.03
CCDC88A-204ENST00000413716 MMEL1Q495T6 779 aa14.83□□□□□ -0.03
CCDC88A-204ENST00000413716 RABEP2Q9H5N1 569 aa14.83□□□□□ -0.03
CCDC88A-204ENST00000413716 CEP104O60308 925 aa14.83□□□□□ -0.03
CCDC88A-204ENST00000413716 ASIC3Q9UHC3 531 aa14.83□□□□□ -0.03
CCDC88A-204ENST00000413716 NBPF6Q5VWK0 638 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 SYT10Q6XYQ8 523 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 NBPF4Q96M43 638 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 ZKSCAN3Q9BRR0 538 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 POLE3Q9NRF9 147 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 GSTA1P08263 222 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 GSTA2P09210 222 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 WTAPQ15007 396 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 ERO1AQ96HE7 468 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 NEK1Q96PY6 1258 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 RSBN1LQ6PCB5 846 aaPredicted RBP14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 NAP1L4Q99733 375 aaKnown RBP14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 ZFXP17010 805 aaPredicted RBP14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 CYP26C1Q6V0L0 522 aa14.83□□□□□ -0.04
CCDC88A-204ENST00000413716 CENPKQ9BS16 269 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 SYCE1Q8N0S2 351 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 MYH10P35580 1976 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 PAK2Q13177 524 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 CAPN7Q9Y6W3 813 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 LMOD1P29536 600 aaPredicted RBP14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 MAN1A1P33908 653 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 CRNKL1Q9BZJ0 848 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 CNNM2Q9H8M5 875 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 GNAT3A8MTJ3 354 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 UBE3BQ7Z3V4 1068 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 TMTC2Q8N394 836 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 KRT12Q99456 494 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 NACA2Q9H009 215 aa14.82□□□□□ -0.04
CCDC88A-204ENST00000413716 EVI5O60447 810 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 KIF11P52732 1056 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 MGARPQ8TDB4 240 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 COPG1Q9Y678 874 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 PPFIA4O75335 1185 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 STX2P32856 288 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 SKOR1P84550 965 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 SUPT6HQ7KZ85 1726 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 AKNAD1Q5T1N1 836 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 NBPF3Q9H094 633 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 CNPY2Q9Y2B0 182 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 TYRO3Q06418 890 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 RTN1Q16799 776 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 CCDC138Q96M89 665 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 CTAGE3PQ8IX95 158 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 RAB17Q9H0T7 212 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 HMGB3O15347 200 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 KRT10P13645 584 aa14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 NONOQ15233 471 aaKnown RBP eCLIP14.81□□□□□ -0.04
CCDC88A-204ENST00000413716 SUFUQ9UMX1 484 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 POLR3CQ9BUI4 534 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 TBC1D2Q9BYX2 928 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 FAM8A1Q9UBU6 413 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 PDS5BQ9NTI5 1447 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 CCDC92Q53HC0 331 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 NAPAP54920 295 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 RGS16O15492 202 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 C16orf87Q6PH81 154 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 STX8Q9UNK0 236 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 ESYT2A0FGR8 921 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 DNAJC25Q9H1X3 360 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 TTF2Q9UNY4 1162 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 CALML3P27482 149 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 PLS1Q14651 629 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms