RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 CCDC158Q5M9N0 1113 aa18.2■□□□□ 0.5
LIMS4-201ENST00000413601 LDLRAD1Q5T700 205 aa18.2■□□□□ 0.5
LIMS4-201ENST00000413601 CDC42EP5Q6NZY7 148 aa18.2■□□□□ 0.5
LIMS4-201ENST00000413601 ERICH6Q7L0X2 663 aa18.2■□□□□ 0.5
LIMS4-201ENST00000413601 ERC1Q8IUD2 1116 aa18.2■□□□□ 0.5
LIMS4-201ENST00000413601 TLR7Q9NYK1 1049 aaKnown RBP18.2■□□□□ 0.5
LIMS4-201ENST00000413601 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.2■□□□□ 0.5
LIMS4-201ENST00000413601 DBNLQ9UJU6 430 aaKnown RBP18.2■□□□□ 0.5
LIMS4-201ENST00000413601 APBB1O00213 710 aa18.19■□□□□ 0.5
LIMS4-201ENST00000413601 USP2O75604 605 aaPredicted RBP18.19■□□□□ 0.5
LIMS4-201ENST00000413601 HSPA8P11142 646 aaKnown RBP18.19■□□□□ 0.5
LIMS4-201ENST00000413601 MAP3K11Q16584 847 aa18.19■□□□□ 0.5
LIMS4-201ENST00000413601 HSP90AB4PQ58FF6 505 aa18.19■□□□□ 0.5
LIMS4-201ENST00000413601 FKBP1CQ5VVH2 108 aa18.19■□□□□ 0.5
LIMS4-201ENST00000413601 SNRKQ9NRH2 765 aa18.19■□□□□ 0.5
LIMS4-201ENST00000413601 TSKSQ9UJT2 592 aa18.19■□□□□ 0.5
LIMS4-201ENST00000413601 MAST2Q6P0Q8 1798 aa18.19■□□□□ 0.5
LIMS4-201ENST00000413601 LAMB1P07942 1786 aa18.18■□□□□ 0.5
LIMS4-201ENST00000413601 MECOMQ03112 1051 aa18.18■□□□□ 0.5
LIMS4-201ENST00000413601 MKRN3Q13064 507 aaKnown RBP18.18■□□□□ 0.5
LIMS4-201ENST00000413601 FAM83AQ86UY5 434 aa18.18■□□□□ 0.5
LIMS4-201ENST00000413601 RHPN1Q8TCX5 695 aa18.18■□□□□ 0.5
LIMS4-201ENST00000413601 CLMNQ96JQ2 1002 aa18.18■□□□□ 0.5
LIMS4-201ENST00000413601 IL1RAPL2Q9NP60 686 aa18.18■□□□□ 0.5
LIMS4-201ENST00000413601 USP40Q9NVE5 1235 aa18.18■□□□□ 0.5
LIMS4-201ENST00000413601 GAKO14976 1311 aa18.18■□□□□ 0.5
LIMS4-201ENST00000413601 CASP8AP2Q9UKL3 1982 aa18.17■□□□□ 0.5
LIMS4-201ENST00000413601 DOCK2Q92608 1830 aa18.17■□□□□ 0.5
LIMS4-201ENST00000413601 IREB2P48200 963 aaKnown RBP18.17■□□□□ 0.5
LIMS4-201ENST00000413601 TCP10Q12799 353 aa18.17■□□□□ 0.5
LIMS4-201ENST00000413601 AACSQ86V21 672 aa18.17■□□□□ 0.5
LIMS4-201ENST00000413601 SLF2Q8IX21 1173 aa18.17■□□□□ 0.5
LIMS4-201ENST00000413601 ZNF384Q8TF68 577 aa18.17■□□□□ 0.5
LIMS4-201ENST00000413601 SLC10A4Q96EP9 437 aa18.17■□□□□ 0.5
LIMS4-201ENST00000413601 CSRNP1Q96S65 589 aa18.17■□□□□ 0.5
LIMS4-201ENST00000413601 CDK5RAP2Q96SN8 1893 aa18.16■□□□□ 0.5
LIMS4-201ENST00000413601 RRP1P56182 461 aaKnown RBP18.16■□□□□ 0.5
LIMS4-201ENST00000413601 NFIAQ12857 509 aa18.16■□□□□ 0.5
LIMS4-201ENST00000413601 FAM163AQ96GL9 167 aaPredicted RBP18.16■□□□□ 0.5
LIMS4-201ENST00000413601 ZNF512BQ96KM6 892 aaPredicted RBP18.16■□□□□ 0.5
LIMS4-201ENST00000413601 BCL11AQ9H165 835 aa18.16■□□□□ 0.5
LIMS4-201ENST00000413601 PRDM10Q9NQV6 1147 aa18.16■□□□□ 0.5
LIMS4-201ENST00000413601 RAI14Q9P0K7 980 aa18.16■□□□□ 0.5
LIMS4-201ENST00000413601 LRP2BPQ9P2M1 347 aa18.16■□□□□ 0.5
LIMS4-201ENST00000413601 MROH7-TTC4A0A0A0MT08 1334 aa18.16■□□□□ 0.5
LIMS4-201ENST00000413601 CA12O43570 354 aa18.15■□□□□ 0.5
LIMS4-201ENST00000413601 FAM151AQ8WW52 585 aa18.15■□□□□ 0.5
LIMS4-201ENST00000413601 NSUN4Q96CB9 384 aaKnown RBP18.15■□□□□ 0.5
LIMS4-201ENST00000413601 KIF1BPQ96EK5 621 aa18.15■□□□□ 0.5
LIMS4-201ENST00000413601 FAM198AQ9UFP1 575 aa18.15■□□□□ 0.5
LIMS4-201ENST00000413601 CYP2E1P05181 493 aaPredicted RBP18.14■□□□□ 0.49
LIMS4-201ENST00000413601 BTDP43251 543 aa18.14■□□□□ 0.49
LIMS4-201ENST00000413601 ZAP70P43403 619 aa18.14■□□□□ 0.49
LIMS4-201ENST00000413601 GSTO1P78417 241 aa18.14■□□□□ 0.49
LIMS4-201ENST00000413601 MAPK8IP2Q13387 824 aaPredicted RBP18.14■□□□□ 0.49
LIMS4-201ENST00000413601 SPRYD7Q5W111 196 aa18.14■□□□□ 0.49
LIMS4-201ENST00000413601 ANKRD13AQ8IZ07 590 aa18.14■□□□□ 0.49
LIMS4-201ENST00000413601 RPAP1Q9BWH6 1393 aaPredicted RBP18.14■□□□□ 0.49
LIMS4-201ENST00000413601 GPR75-ASB3A0A0A6YYF3 556 aa18.13■□□□□ 0.49
LIMS4-201ENST00000413601 UNCXA6NJT0 531 aa18.13■□□□□ 0.49
LIMS4-201ENST00000413601 RAB11FIP3O75154 756 aa18.13■□□□□ 0.49
LIMS4-201ENST00000413601 TRPA1O75762 1119 aa18.13■□□□□ 0.49
LIMS4-201ENST00000413601 LDHCP07864 332 aa18.13■□□□□ 0.49
LIMS4-201ENST00000413601 ZFPM1Q8IX07 1006 aa18.13■□□□□ 0.49
LIMS4-201ENST00000413601 REM2Q8IYK8 340 aaPredicted RBP18.13■□□□□ 0.49
LIMS4-201ENST00000413601 CLASRPQ8N2M8 674 aaKnown RBP18.13■□□□□ 0.49
LIMS4-201ENST00000413601 WNK4Q96J92 1243 aa18.13■□□□□ 0.49
LIMS4-201ENST00000413601 RNF186Q9NXI6 227 aa18.13■□□□□ 0.49
LIMS4-201ENST00000413601 FOCADQ5VW36 1801 aa18.12■□□□□ 0.49
LIMS4-201ENST00000413601 RGS3P49796 1198 aa18.12■□□□□ 0.49
LIMS4-201ENST00000413601 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.12■□□□□ 0.49
LIMS4-201ENST00000413601 MIGA2Q7L4E1 593 aa18.12■□□□□ 0.49
LIMS4-201ENST00000413601 HOOK2Q96ED9 719 aa18.12■□□□□ 0.49
LIMS4-201ENST00000413601 IDI2Q9BXS1 227 aa18.12■□□□□ 0.49
LIMS4-201ENST00000413601 ELP3Q9H9T3 547 aa18.12■□□□□ 0.49
LIMS4-201ENST00000413601 PIH1D3Q9NQM4 214 aaKnown RBP18.12■□□□□ 0.49
LIMS4-201ENST00000413601 NDUFB9Q9Y6M9 179 aa18.12■□□□□ 0.49
LIMS4-201ENST00000413601 RHBDL3P58872 404 aa18.11■□□□□ 0.49
LIMS4-201ENST00000413601 MAP3K9P80192 1104 aa18.11■□□□□ 0.49
LIMS4-201ENST00000413601 TNS4Q8IZW8 715 aa18.11■□□□□ 0.49
LIMS4-201ENST00000413601 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.11■□□□□ 0.49
LIMS4-201ENST00000413601 RFX7Q2KHR2 1363 aa18.1■□□□□ 0.49
LIMS4-201ENST00000413601 ENTPD3O75355 529 aa18.1■□□□□ 0.49
LIMS4-201ENST00000413601 WDHD1O75717 1129 aaPredicted RBP18.1■□□□□ 0.49
LIMS4-201ENST00000413601 IFIT2P09913 472 aaKnown RBP18.1■□□□□ 0.49
LIMS4-201ENST00000413601 ZBTB48P10074 688 aaPredicted RBP18.1■□□□□ 0.49
LIMS4-201ENST00000413601 GJA5P36382 358 aa18.1■□□□□ 0.49
LIMS4-201ENST00000413601 TM4SF4P48230 202 aa18.1■□□□□ 0.49
LIMS4-201ENST00000413601 PICALMQ13492 652 aa18.1■□□□□ 0.49
LIMS4-201ENST00000413601 VGLL4Q14135 290 aa18.1■□□□□ 0.49
LIMS4-201ENST00000413601 DCAF15Q66K64 600 aa18.1■□□□□ 0.49
LIMS4-201ENST00000413601 NAA16Q6N069 864 aaPredicted RBP18.1■□□□□ 0.49
LIMS4-201ENST00000413601 DDX4Q9NQI0 724 aaKnown RBP18.1■□□□□ 0.49
LIMS4-201ENST00000413601 SAGE1Q9NXZ1 904 aa18.1■□□□□ 0.49
LIMS4-201ENST00000413601 SREBF2Q12772 1141 aa18.09■□□□□ 0.49
LIMS4-201ENST00000413601 ZKSCAN4Q969J2 545 aaPredicted RBP18.09■□□□□ 0.49
LIMS4-201ENST00000413601 OPTNQ96CV9 577 aa18.09■□□□□ 0.49
LIMS4-201ENST00000413601 WRNIP1Q96S55 665 aa18.09■□□□□ 0.49
LIMS4-201ENST00000413601 ANTXR1Q9H6X2 564 aa18.09■□□□□ 0.49
LIMS4-201ENST00000413601 CSADQ9Y600 493 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms