RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.84■■□□□ 1.41
SMARCB1-204ENST00000407422 CNKSR2Q8WXI2 1034 aa23.84■■□□□ 1.41
SMARCB1-204ENST00000407422 OPTNQ96CV9 577 aa23.84■■□□□ 1.41
SMARCB1-204ENST00000407422 IGF2BP3O00425 579 aaKnown RBP eCLIP23.84■■□□□ 1.41
SMARCB1-204ENST00000407422 ZBTB7BO15156 539 aaPredicted RBP23.84■■□□□ 1.41
SMARCB1-204ENST00000407422 INHBEP58166 350 aa23.84■■□□□ 1.41
SMARCB1-204ENST00000407422 MAP3K9P80192 1104 aa23.84■■□□□ 1.41
SMARCB1-204ENST00000407422 NFIAQ12857 509 aa23.84■■□□□ 1.41
SMARCB1-204ENST00000407422 ABCF2Q9UG63 623 aa23.84■■□□□ 1.41
SMARCB1-204ENST00000407422 GPR25O00155 361 aa23.83■■□□□ 1.41
SMARCB1-204ENST00000407422 ATP8B2P98198 1209 aa23.83■■□□□ 1.41
SMARCB1-204ENST00000407422 TCP10Q12799 353 aa23.83■■□□□ 1.41
SMARCB1-204ENST00000407422 SSH3Q8TE77 659 aa23.83■■□□□ 1.41
SMARCB1-204ENST00000407422 ZGPATQ8N5A5 531 aaKnown RBP23.82■■□□□ 1.4
SMARCB1-204ENST00000407422 CFHR5Q9BXR6 569 aa23.82■■□□□ 1.4
SMARCB1-204ENST00000407422 USP40Q9NVE5 1235 aa23.82■■□□□ 1.4
SMARCB1-204ENST00000407422 PDS5AQ29RF7 1337 aaKnown RBP23.82■■□□□ 1.4
SMARCB1-204ENST00000407422 PI16Q6UXB8 463 aa23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 CTU1Q7Z7A3 348 aaKnown RBP23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 PANK1Q8TE04 598 aa23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 FAM151AQ8WW52 585 aa23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 RPAP1Q9BWH6 1393 aaPredicted RBP23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 ALDH1A1P00352 501 aa23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 GORABQ5T7V8 394 aa23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 MIGA2Q7L4E1 593 aa23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 PTPN18Q99952 460 aa23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 HMG20BQ9P0W2 317 aa23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 FAM198AQ9UFP1 575 aa23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 CSADQ9Y600 493 aa23.81■■□□□ 1.4
SMARCB1-204ENST00000407422 NOM1Q5C9Z4 860 aaKnown RBP23.8■■□□□ 1.4
SMARCB1-204ENST00000407422 DZIP1Q86YF9 867 aaKnown RBP23.8■■□□□ 1.4
SMARCB1-204ENST00000407422 ZKSCAN4Q969J2 545 aaPredicted RBP23.8■■□□□ 1.4
SMARCB1-204ENST00000407422 WRNIP1Q96S55 665 aa23.8■■□□□ 1.4
SMARCB1-204ENST00000407422 GAKO14976 1311 aa23.79■■□□□ 1.4
SMARCB1-204ENST00000407422 ZFPM1Q8IX07 1006 aa23.79■■□□□ 1.4
SMARCB1-204ENST00000407422 MS4A4AQ96JQ5 239 aa23.79■■□□□ 1.4
SMARCB1-204ENST00000407422 SNCAIPQ9Y6H5 919 aa23.79■■□□□ 1.4
SMARCB1-204ENST00000407422 TESPA1A2RU30 521 aaPredicted RBP23.78■■□□□ 1.4
SMARCB1-204ENST00000407422 SURF6O75683 361 aaKnown RBP23.78■■□□□ 1.4
SMARCB1-204ENST00000407422 SPATA5Q8NB90 893 aa23.78■■□□□ 1.4
SMARCB1-204ENST00000407422 ZNF384Q8TF68 577 aa23.78■■□□□ 1.4
SMARCB1-204ENST00000407422 HOOK2Q96ED9 719 aa23.78■■□□□ 1.4
SMARCB1-204ENST00000407422 OTUD5Q96G74 571 aa23.78■■□□□ 1.4
SMARCB1-204ENST00000407422 HTTP42858 3142 aa23.78■■□□□ 1.4
SMARCB1-204ENST00000407422 ARID4AP29374 1257 aaPredicted RBP23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 OS9Q13438 667 aaPredicted RBP23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 DCAF15Q66K64 600 aa23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 SPTY2D1Q68D10 685 aaPredicted RBP23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 TBC1D9Q6ZT07 1266 aa23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 CENPFP49454 3210 aa23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 FKTNO75072 461 aa23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 MCAMP43121 646 aa23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 MECOMQ03112 1051 aa23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 TNNI3KQ59H18 835 aa23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 FPGT-TNNI3KV9GXZ4 949 aa23.77■■□□□ 1.4
SMARCB1-204ENST00000407422 ERICH6Q7L0X2 663 aa23.76■■□□□ 1.39
SMARCB1-204ENST00000407422 BRI3BPQ8WY22 251 aa23.76■■□□□ 1.39
SMARCB1-204ENST00000407422 FAM163AQ96GL9 167 aaPredicted RBP23.76■■□□□ 1.39
SMARCB1-204ENST00000407422 ZNF341Q9BYN7 854 aa23.76■■□□□ 1.39
SMARCB1-204ENST00000407422 SPDYE5A6NIY4 337 aa23.75■■□□□ 1.39
SMARCB1-204ENST00000407422 INPP5BP32019 993 aa23.75■■□□□ 1.39
SMARCB1-204ENST00000407422 RGS3P49796 1198 aa23.75■■□□□ 1.39
SMARCB1-204ENST00000407422 CRHR2Q13324 411 aa23.75■■□□□ 1.39
SMARCB1-204ENST00000407422 DBNDD2Q9BQY9 259 aa23.75■■□□□ 1.39
SMARCB1-204ENST00000407422 GPR108Q9NPR9 543 aa23.75■■□□□ 1.39
SMARCB1-204ENST00000407422 MROH7-TTC4A0A0A0MT08 1334 aa23.75■■□□□ 1.39
SMARCB1-204ENST00000407422 BTDP43251 543 aa23.74■■□□□ 1.39
SMARCB1-204ENST00000407422 OTUD7BQ6GQQ9 843 aa23.74■■□□□ 1.39
SMARCB1-204ENST00000407422 CEP85Q6P2H3 762 aa23.74■■□□□ 1.39
SMARCB1-204ENST00000407422 SLF2Q8IX21 1173 aa23.74■■□□□ 1.39
SMARCB1-204ENST00000407422 IDI2Q9BXS1 227 aa23.74■■□□□ 1.39
SMARCB1-204ENST00000407422 NOP58Q9Y2X3 529 aaKnown RBP23.74■■□□□ 1.39
SMARCB1-204ENST00000407422 RFX7Q2KHR2 1363 aa23.74■■□□□ 1.39
SMARCB1-204ENST00000407422 DOCK2Q92608 1830 aa23.74■■□□□ 1.39
SMARCB1-204ENST00000407422 CCL15-CCL14A0A0B4J2E2 113 aa23.73■■□□□ 1.39
SMARCB1-204ENST00000407422 GTF2A2P52657 109 aa23.73■■□□□ 1.39
SMARCB1-204ENST00000407422 CCL15Q16663 113 aa23.73■■□□□ 1.39
SMARCB1-204ENST00000407422 ERO1BQ86YB8 467 aa23.73■■□□□ 1.39
SMARCB1-204ENST00000407422 WDHD1O75717 1129 aaPredicted RBP23.73■■□□□ 1.39
SMARCB1-204ENST00000407422 UQCRFS1P1P0C7P4 283 aa23.73■■□□□ 1.39
SMARCB1-204ENST00000407422 NSUN4Q96CB9 384 aaKnown RBP23.73■■□□□ 1.39
SMARCB1-204ENST00000407422 SNRKQ9NRH2 765 aa23.73■■□□□ 1.39
SMARCB1-204ENST00000407422 ZNF112Q9UJU3 913 aa23.73■■□□□ 1.39
SMARCB1-204ENST00000407422 SH3BP5LQ7L8J4 393 aa23.72■■□□□ 1.39
SMARCB1-204ENST00000407422 DDX4Q9NQI0 724 aaKnown RBP23.72■■□□□ 1.39
SMARCB1-204ENST00000407422 MYO5AQ9Y4I1 1855 aaKnown RBP23.72■■□□□ 1.39
SMARCB1-204ENST00000407422 GPR75-ASB3A0A0A6YYF3 556 aa23.71■■□□□ 1.39
SMARCB1-204ENST00000407422 IRF6O14896 467 aa23.71■■□□□ 1.39
SMARCB1-204ENST00000407422 RAI14Q9P0K7 980 aa23.71■■□□□ 1.39
SMARCB1-204ENST00000407422 ATRNL1Q5VV63 1379 aa23.71■■□□□ 1.39
SMARCB1-204ENST00000407422 ENTPD3O75355 529 aa23.7■■□□□ 1.39
SMARCB1-204ENST00000407422 RHBDL3P58872 404 aa23.7■■□□□ 1.39
SMARCB1-204ENST00000407422 PICALMQ13492 652 aa23.7■■□□□ 1.39
SMARCB1-204ENST00000407422 PKN2Q16513 984 aaKnown RBP23.7■■□□□ 1.39
SMARCB1-204ENST00000407422 TTC39AQ5SRH9 613 aa23.7■■□□□ 1.39
SMARCB1-204ENST00000407422 FAM43AQ8N2R8 423 aa23.7■■□□□ 1.39
SMARCB1-204ENST00000407422 HPS5Q9UPZ3 1129 aa23.7■■□□□ 1.39
SMARCB1-204ENST00000407422 SLURP2P0DP57 97 aa23.7■■□□□ 1.38
SMARCB1-204ENST00000407422 PPIL2Q13356 520 aa23.7■■□□□ 1.38
SMARCB1-204ENST00000407422 CCDC158Q5M9N0 1113 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms