RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 NAPAP54920 295 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 ARHGAP27Q6ZUM4 889 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 PDILTQ8N807 584 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 MYOM1P52179 1685 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 SMC2O95347 1197 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 NF2P35240 595 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 GPR162Q16538 588 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 WDHD1O75717 1129 aaPredicted RBP10.5□□□□□ -0.73
LIG4-202ENST00000405925 IPO7O95373 1038 aaKnown RBP10.5□□□□□ -0.73
LIG4-202ENST00000405925 BTDP43251 543 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 DNM1Q05193 864 aaKnown RBP10.5□□□□□ -0.73
LIG4-202ENST00000405925 PPARAQ07869 468 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 ZNF34Q8IZ26 560 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 MASTLQ96GX5 879 aa10.5□□□□□ -0.73
LIG4-202ENST00000405925 SEMA3EO15041 775 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 F13A1P00488 732 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 SYT1P21579 422 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 TFAP4Q01664 338 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 RABL6Q3YEC7 729 aaPredicted RBP10.49□□□□□ -0.73
LIG4-202ENST00000405925 FAM47AQ5JRC9 791 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 CCDC148Q8NFR7 591 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 EPB41L2O43491 1005 aaKnown RBP10.49□□□□□ -0.73
LIG4-202ENST00000405925 MCAMP43121 646 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 CKAP2LQ8IYA6 745 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 RASEFQ8IZ41 740 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 CNPY2Q9Y2B0 182 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 C21orf2O43822 256 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 EPS15P42566 896 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 STIM1Q13586 685 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 TTLL6Q8N841 843 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 OSBP2Q969R2 916 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 RAB34Q9BZG1 259 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 TM6SF1Q9BZW5 370 aa10.49□□□□□ -0.73
LIG4-202ENST00000405925 ADD2P35612 726 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 TMEM132AQ24JP5 1023 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 TRMT1LQ7Z2T5 733 aaKnown RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 LSG1Q9H089 658 aaKnown RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 GRM1Q13255 1194 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 DIXDC1Q155Q3 683 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 ZYXQ15942 572 aaKnown RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 TMEM266Q2M3C6 531 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 MAP4K1Q92918 833 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 PIH1D3Q9NQM4 214 aaKnown RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 RBM27Q9P2N5 1060 aaKnown RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 ARPP21Q9UBL0 812 aaPredicted RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 RAD17O75943 681 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 UBA7P41226 1012 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 DYNLL1P63167 89 aaKnown RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 PRKG1Q13976 671 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 CCDC93Q567U6 631 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 DEFB132Q7Z7B7 95 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 PUS7LQ9H0K6 701 aaKnown RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 GPCPD1Q9NPB8 672 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 H7C1D1 291 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 PARP1P09874 1014 aaKnown RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 TNIP1Q15025 636 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 SLFNL1Q499Z3 407 aa10.48□□□□□ -0.73
LIG4-202ENST00000405925 FNBP4Q8N3X1 1017 aaPredicted RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 RRP36Q96EU6 259 aaKnown RBP10.48□□□□□ -0.73
LIG4-202ENST00000405925 CNTNAP4Q9C0A0 1308 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 ADGRB2O60241 1585 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 CYP21A2P08686 494 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 MARCKSP29966 332 aaPredicted RBP10.47□□□□□ -0.73
LIG4-202ENST00000405925 CCDC183Q5T5S1 534 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 PRR5LQ6MZQ0 368 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 INTS5Q6P9B9 1019 aaKnown RBP10.47□□□□□ -0.73
LIG4-202ENST00000405925 CNNM3Q8NE01 707 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 MAGEC2Q9UBF1 373 aaPredicted RBP10.47□□□□□ -0.73
LIG4-202ENST00000405925 SERPINC1P01008 464 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 ADCK5Q3MIX3 580 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 ZNF408Q9H9D4 720 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 TCP11L1Q9NUJ3 509 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 DACH1Q9UI36 760 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 PSDA5PKW4 1024 aaPredicted RBP10.47□□□□□ -0.73
LIG4-202ENST00000405925 M0R2C6 588 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 PRKAB2O43741 272 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 UBE2HP62256 183 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 FILIP1LQ4L180 1135 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 OTUD7BQ6GQQ9 843 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 KLHL10Q6JEL2 608 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 PHKBQ93100 1093 aa10.47□□□□□ -0.73
LIG4-202ENST00000405925 JAK2O60674 1132 aa10.46□□□□□ -0.73
LIG4-202ENST00000405925 CALML3P27482 149 aa10.46□□□□□ -0.73
LIG4-202ENST00000405925 EHMT1Q9H9B1 1298 aa10.46□□□□□ -0.73
LIG4-202ENST00000405925 CCDC39Q9UFE4 941 aa10.46□□□□□ -0.73
LIG4-202ENST00000405925 R3HCC1Q9Y3T6 440 aaKnown RBP10.46□□□□□ -0.73
LIG4-202ENST00000405925 V9GY48 417 aaPredicted RBP10.46□□□□□ -0.73
LIG4-202ENST00000405925 KIF1AQ12756 1690 aa10.46□□□□□ -0.73
LIG4-202ENST00000405925 TCP10L2B9ZVM9 353 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 TRAF1Q13077 416 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 CC2D2BQ6DHV5 1058 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 FAM173BQ6P4H8 233 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 LCORLQ8N3X6 602 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 SPC24Q8NBT2 197 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 BRIP1Q9BX63 1249 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 C6orf50Q9HD87 102 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 DDX19AQ9NUU7 478 aaKnown RBP10.46□□□□□ -0.74
LIG4-202ENST00000405925 NTSR2O95665 410 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 PRDX5P30044 214 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 ATG9AQ7Z3C6 839 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms