RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MECOMQ03112 1051 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 SAMD7Q7Z3H4 446 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 SMC1BQ8NDV3 1235 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 RILPL2Q969X0 211 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 SNRKQ9NRH2 765 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 GAKO14976 1311 aa12.22□□□□□ -0.45
VPS53-202ENST00000389040 F8W031 263 aaPredicted RBP12.22□□□□□ -0.45
VPS53-202ENST00000389040 K7ELQ4 463 aaPredicted RBP12.22□□□□□ -0.45
VPS53-202ENST00000389040 GOLIM4O00461 696 aa12.22□□□□□ -0.45
VPS53-202ENST00000389040 BAG3O95817 575 aa12.22□□□□□ -0.45
VPS53-202ENST00000389040 RBM5P52756 815 aaKnown RBP eCLIP12.22□□□□□ -0.45
VPS53-202ENST00000389040 HIRAP54198 1017 aaPredicted RBP12.22□□□□□ -0.45
VPS53-202ENST00000389040 NAA16Q6N069 864 aaPredicted RBP12.22□□□□□ -0.45
VPS53-202ENST00000389040 CHADLQ6NUI6 762 aa12.22□□□□□ -0.45
VPS53-202ENST00000389040 KBTBD3Q8NAB2 608 aa12.22□□□□□ -0.45
VPS53-202ENST00000389040 DCPSQ96C86 337 aaKnown RBP12.22□□□□□ -0.45
VPS53-202ENST00000389040 EVI5LQ96CN4 794 aa12.22□□□□□ -0.45
VPS53-202ENST00000389040 DNAJC2Q99543 621 aaKnown RBP12.22□□□□□ -0.45
VPS53-202ENST00000389040 GPR75-ASB3A0A0A6YYF3 556 aa12.21□□□□□ -0.45
VPS53-202ENST00000389040 CHMLP26374 656 aa12.21□□□□□ -0.45
VPS53-202ENST00000389040 DDIT3P35638 169 aa12.21□□□□□ -0.45
VPS53-202ENST00000389040 PPP4CP60510 307 aa12.21□□□□□ -0.45
VPS53-202ENST00000389040 TNFAIP1Q13829 316 aa12.21□□□□□ -0.45
VPS53-202ENST00000389040 TBC1D10BQ4KMP7 808 aaPredicted RBP12.21□□□□□ -0.45
VPS53-202ENST00000389040 EAPPQ56P03 285 aaPredicted RBP12.21□□□□□ -0.45
VPS53-202ENST00000389040 APOBEC3HQ6NTF7 200 aaKnown RBP12.21□□□□□ -0.45
VPS53-202ENST00000389040 CDC37L1Q7L3B6 337 aa12.21□□□□□ -0.45
VPS53-202ENST00000389040 APOBEC3FQ8IUX4 373 aaKnown RBP12.21□□□□□ -0.45
VPS53-202ENST00000389040 NOL10Q9BSC4 688 aaKnown RBP12.21□□□□□ -0.45
VPS53-202ENST00000389040 ESYT1Q9BSJ8 1104 aa12.21□□□□□ -0.45
VPS53-202ENST00000389040 PPP2R3BQ9Y5P8 575 aa12.21□□□□□ -0.45
VPS53-202ENST00000389040 IDH1O75874 414 aaKnown RBP12.21□□□□□ -0.46
VPS53-202ENST00000389040 UBE3CQ15386 1083 aa12.21□□□□□ -0.46
VPS53-202ENST00000389040 GRIK5Q16478 980 aa12.21□□□□□ -0.46
VPS53-202ENST00000389040 RBM26Q5T8P6 1007 aaKnown RBP12.21□□□□□ -0.46
VPS53-202ENST00000389040 TRPM4Q8TD43 1214 aa12.21□□□□□ -0.46
VPS53-202ENST00000389040 PRMT6Q96LA8 375 aaPredicted RBP12.21□□□□□ -0.46
VPS53-202ENST00000389040 PIH1D3Q9NQM4 214 aaKnown RBP12.21□□□□□ -0.46
VPS53-202ENST00000389040 TMOD2Q9NZR1 351 aa12.21□□□□□ -0.46
VPS53-202ENST00000389040 CLEC11AQ9Y240 323 aa12.21□□□□□ -0.46
VPS53-202ENST00000389040 MROH7-TTC4A0A0A0MT08 1334 aa12.21□□□□□ -0.46
VPS53-202ENST00000389040 SLC9C2Q5TAH2 1124 aa12.2□□□□□ -0.46
VPS53-202ENST00000389040 CNTROBQ8N137 903 aa12.2□□□□□ -0.46
VPS53-202ENST00000389040 DAGLAQ9Y4D2 1042 aa12.2□□□□□ -0.46
VPS53-202ENST00000389040 SHTN1A0MZ66 631 aa12.19□□□□□ -0.46
VPS53-202ENST00000389040 TNNI2P48788 182 aa12.19□□□□□ -0.46
VPS53-202ENST00000389040 NBPF9Q3BBW0 867 aa12.19□□□□□ -0.46
VPS53-202ENST00000389040 SPDYE2Q495Y8 402 aa12.19□□□□□ -0.46
VPS53-202ENST00000389040 FAM83AQ86UY5 434 aa12.19□□□□□ -0.46
VPS53-202ENST00000389040 SULF1Q8IWU6 871 aa12.19□□□□□ -0.46
VPS53-202ENST00000389040 CIZ1Q9ULV3 898 aaPredicted RBP12.19□□□□□ -0.46
VPS53-202ENST00000389040 AK9Q5TCS8 1911 aa12.19□□□□□ -0.46
VPS53-202ENST00000389040 EGFRP00533 1210 aa12.19□□□□□ -0.46
VPS53-202ENST00000389040 HSP90AA1P07900 732 aaKnown RBP12.19□□□□□ -0.46
VPS53-202ENST00000389040 RFX7Q2KHR2 1363 aa12.19□□□□□ -0.46
VPS53-202ENST00000389040 ZNF646O15015 1829 aaPredicted RBP12.18□□□□□ -0.46
VPS53-202ENST00000389040 HIP1O00291 1037 aa12.18□□□□□ -0.46
VPS53-202ENST00000389040 PDE6AP16499 860 aa12.18□□□□□ -0.46
VPS53-202ENST00000389040 ADD2P35612 726 aa12.18□□□□□ -0.46
VPS53-202ENST00000389040 GSE1Q14687 1217 aa12.18□□□□□ -0.46
VPS53-202ENST00000389040 DIXDC1Q155Q3 683 aa12.18□□□□□ -0.46
VPS53-202ENST00000389040 ANGEL2Q5VTE6 544 aaKnown RBP12.18□□□□□ -0.46
VPS53-202ENST00000389040 MAGEB6Q8N7X4 407 aa12.18□□□□□ -0.46
VPS53-202ENST00000389040 IDI2Q9BXS1 227 aa12.18□□□□□ -0.46
VPS53-202ENST00000389040 ST18O60284 1047 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 CYP7A1P22680 504 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 MCCP23508 829 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 KRT26Q7Z3Y9 468 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 ZNF384Q8TF68 577 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 HOOK2Q96ED9 719 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 ANO2Q9NQ90 1003 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 GGA3Q9NZ52 723 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 ZNF70Q9UC06 446 aaPredicted RBP12.17□□□□□ -0.46
VPS53-202ENST00000389040 TCRBV5S4A2TA0A5A2 114 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 RNF113AO15541 343 aaKnown RBP12.17□□□□□ -0.46
VPS53-202ENST00000389040 ENTPD3O75355 529 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 ITGBL1O95965 494 aaPredicted RBP12.17□□□□□ -0.46
VPS53-202ENST00000389040 BTDP43251 543 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 CDC42EP5Q6NZY7 148 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 TDRD3Q9H7E2 651 aaKnown RBP12.17□□□□□ -0.46
VPS53-202ENST00000389040 USP40Q9NVE5 1235 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 TAOK2Q9UL54 1235 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 NDUFB9Q9Y6M9 179 aa12.17□□□□□ -0.46
VPS53-202ENST00000389040 AKAP11Q9UKA4 1901 aa12.16□□□□□ -0.46
VPS53-202ENST00000389040 EPB41L2O43491 1005 aaKnown RBP12.16□□□□□ -0.46
VPS53-202ENST00000389040 SUPT20HL1Q3ZLR7 823 aa12.16□□□□□ -0.46
VPS53-202ENST00000389040 APPBP2Q92624 585 aa12.16□□□□□ -0.46
VPS53-202ENST00000389040 FSD1Q9BTV5 496 aa12.16□□□□□ -0.46
VPS53-202ENST00000389040 DEFB129Q9H1M3 183 aa12.16□□□□□ -0.46
VPS53-202ENST00000389040 ZNF532Q9HCE3 1301 aa12.16□□□□□ -0.46
VPS53-202ENST00000389040 ADAMTSL1Q8N6G6 1762 aa12.16□□□□□ -0.46
VPS53-202ENST00000389040 POTEIP0CG38 1075 aa12.15□□□□□ -0.46
VPS53-202ENST00000389040 POTEJP0CG39 1038 aa12.15□□□□□ -0.46
VPS53-202ENST00000389040 MCM4P33991 863 aa12.15□□□□□ -0.46
VPS53-202ENST00000389040 ANAPC15P60006 121 aa12.15□□□□□ -0.46
VPS53-202ENST00000389040 MAP1SQ66K74 1059 aaPredicted RBP12.15□□□□□ -0.46
VPS53-202ENST00000389040 EDC3Q96F86 508 aaKnown RBP12.15□□□□□ -0.46
VPS53-202ENST00000389040 MAGEB6P1A0A0J9YX57 407 aa12.15□□□□□ -0.46
VPS53-202ENST00000389040 UNCXA6NJT0 531 aa12.15□□□□□ -0.46
VPS53-202ENST00000389040 GNAT2P19087 354 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms