RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 UQCRFS1P1P0C7P4 283 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 MCM5P33992 734 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 RPS8P62241 208 aaKnown RBP12.63□□□□□ -0.39
NEDD9-201ENST00000379433 EVX2Q03828 476 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 TTF1Q15361 905 aaPredicted RBP12.63□□□□□ -0.39
NEDD9-201ENST00000379433 ADGRA1Q86SQ6 560 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 KCNB2Q92953 911 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 TAF1P21675 1872 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 LTBP4Q8N2S1 1624 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 TTC36A6NLP5 189 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 MBD3O95983 291 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 PDCP20941 246 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 ZSCAN25Q6NSZ9 544 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 UBR2Q8IWV8 1755 aa12.63□□□□□ -0.39
NEDD9-201ENST00000379433 BAZ2BQ9UIF8 2168 aaKnown RBP12.62□□□□□ -0.39
NEDD9-201ENST00000379433 GNL2Q13823 731 aaKnown RBP12.62□□□□□ -0.39
NEDD9-201ENST00000379433 CYB5R4Q7L1T6 521 aa12.62□□□□□ -0.39
NEDD9-201ENST00000379433 ZNF513Q8N8E2 541 aaPredicted RBP12.62□□□□□ -0.39
NEDD9-201ENST00000379433 CLEC17AQ6ZS10 378 aa12.62□□□□□ -0.39
NEDD9-201ENST00000379433 AATFQ9NY61 560 aaKnown RBP eCLIP12.62□□□□□ -0.39
NEDD9-201ENST00000379433 IFIT3O14879 490 aaKnown RBP12.62□□□□□ -0.39
NEDD9-201ENST00000379433 CTDNEP1O95476 244 aa12.62□□□□□ -0.39
NEDD9-201ENST00000379433 NFIXQ14938 502 aa12.62□□□□□ -0.39
NEDD9-201ENST00000379433 MSL1Q68DK7 614 aa12.62□□□□□ -0.39
NEDD9-201ENST00000379433 TJP1Q07157 1748 aa12.62□□□□□ -0.39
NEDD9-201ENST00000379433 SLIT2O94813 1529 aa12.61□□□□□ -0.39
NEDD9-201ENST00000379433 NEDD4P46934 1319 aa12.61□□□□□ -0.39
NEDD9-201ENST00000379433 LIG1P18858 919 aa12.61□□□□□ -0.39
NEDD9-201ENST00000379433 IFNL3Q8IZI9 196 aa12.61□□□□□ -0.39
NEDD9-201ENST00000379433 NSUN7Q8NE18 718 aaKnown RBP12.61□□□□□ -0.39
NEDD9-201ENST00000379433 STRBPQ96SI9 672 aaKnown RBP12.61□□□□□ -0.39
NEDD9-201ENST00000379433 ORC3Q9UBD5 711 aaPredicted RBP12.61□□□□□ -0.39
NEDD9-201ENST00000379433 NUP98P52948 1817 aa12.61□□□□□ -0.39
NEDD9-201ENST00000379433 RANBP6O60518 1105 aaKnown RBP12.61□□□□□ -0.39
NEDD9-201ENST00000379433 PRR29P0C7W0 189 aa12.61□□□□□ -0.39
NEDD9-201ENST00000379433 PRDX5P30044 214 aa12.61□□□□□ -0.39
NEDD9-201ENST00000379433 TMEM67Q5HYA8 995 aa12.61□□□□□ -0.39
NEDD9-201ENST00000379433 SYAP1Q96A49 352 aaPredicted RBP12.61□□□□□ -0.39
NEDD9-201ENST00000379433 PLEKHG2Q9H7P9 1386 aa12.61□□□□□ -0.39
NEDD9-201ENST00000379433 RPS6KA4O75676 772 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 FGFR2P21802 821 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 ANTXR2P58335 489 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 NBPF20Q3BBV1 942 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 RINLQ6ZS11 566 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 EP400NLQ6ZTU2 488 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 NBPF11Q86T75 865 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 FNBP4Q8N3X1 1017 aaPredicted RBP12.6□□□□□ -0.39
NEDD9-201ENST00000379433 EPB41L4AQ9HCS5 686 aaPredicted RBP12.6□□□□□ -0.39
NEDD9-201ENST00000379433 RRAGDQ9NQL2 400 aaPredicted RBP12.6□□□□□ -0.39
NEDD9-201ENST00000379433 NUP188Q5SRE5 1749 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 CNBD1Q8NA66 436 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 CERKQ8TCT0 537 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 GNL3LQ9NVN8 582 aaKnown RBP12.6□□□□□ -0.39
NEDD9-201ENST00000379433 NARFQ9UHQ1 456 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 EXOSC10Q01780 885 aaKnown RBP12.6□□□□□ -0.39
NEDD9-201ENST00000379433 NBPF3Q9H094 633 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 DACT1Q9NYF0 836 aa12.6□□□□□ -0.39
NEDD9-201ENST00000379433 PLCH1Q4KWH8 1693 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 AHDC1Q5TGY3 1603 aaPredicted RBP12.59□□□□□ -0.39
NEDD9-201ENST00000379433 ME1P48163 572 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 UBE2HP62256 183 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 OLFM4Q6UX06 510 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 TSPY26PQ9H489 355 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 F8W031 263 aaPredicted RBP12.59□□□□□ -0.39
NEDD9-201ENST00000379433 TSGA10IPQ3SY00 556 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 NAA16Q6N069 864 aaPredicted RBP12.59□□□□□ -0.39
NEDD9-201ENST00000379433 LRSAM1Q6UWE0 723 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 MFSD6Q6ZSS7 791 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 FAM84BQ96KN1 310 aaPredicted RBP12.59□□□□□ -0.39
NEDD9-201ENST00000379433 ZSWIM5Q9P217 1185 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 RIMBP2O15034 1052 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 METAP2P50579 478 aaKnown RBP eCLIP12.59□□□□□ -0.39
NEDD9-201ENST00000379433 SF3A1Q15459 793 aaKnown RBP12.59□□□□□ -0.39
NEDD9-201ENST00000379433 SMAP1Q8IYB5 467 aaPredicted RBP12.59□□□□□ -0.39
NEDD9-201ENST00000379433 C8orf76Q96K31 380 aa12.59□□□□□ -0.39
NEDD9-201ENST00000379433 ZNF500O60304 480 aaPredicted RBP12.58□□□□□ -0.4
NEDD9-201ENST00000379433 PFKFB2O60825 505 aa12.58□□□□□ -0.4
NEDD9-201ENST00000379433 SPTY2D1Q68D10 685 aaPredicted RBP12.58□□□□□ -0.4
NEDD9-201ENST00000379433 CLEC4GQ6UXB4 293 aa12.58□□□□□ -0.4
NEDD9-201ENST00000379433 BANK1Q8NDB2 785 aa12.58□□□□□ -0.4
NEDD9-201ENST00000379433 NACAP1Q9BZK3 213 aa12.58□□□□□ -0.4
NEDD9-201ENST00000379433 USP25Q9UHP3 1055 aa12.58□□□□□ -0.4
NEDD9-201ENST00000379433 MAGEB6P1A0A0J9YX57 407 aa12.58□□□□□ -0.4
NEDD9-201ENST00000379433 DIXDC1Q155Q3 683 aa12.58□□□□□ -0.4
NEDD9-201ENST00000379433 RPGRQ92834 1020 aaKnown RBP12.58□□□□□ -0.4
NEDD9-201ENST00000379433 IL17RAQ96F46 866 aa12.58□□□□□ -0.4
NEDD9-201ENST00000379433 LRP6O75581 1613 aa12.58□□□□□ -0.4
NEDD9-201ENST00000379433 CCDC69A6NI79 296 aa12.57□□□□□ -0.4
NEDD9-201ENST00000379433 GSG1L2A8MUP6 293 aa12.57□□□□□ -0.4
NEDD9-201ENST00000379433 UBE3CQ15386 1083 aa12.57□□□□□ -0.4
NEDD9-201ENST00000379433 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.57□□□□□ -0.4
NEDD9-201ENST00000379433 SLC26A6Q9BXS9 759 aa12.57□□□□□ -0.4
NEDD9-201ENST00000379433 TRPC5Q9UL62 973 aaPredicted RBP12.57□□□□□ -0.4
NEDD9-201ENST00000379433 C6orf229H3BNL8 230 aa12.57□□□□□ -0.4
NEDD9-201ENST00000379433 HIBADHP31937 336 aaKnown RBP12.57□□□□□ -0.4
NEDD9-201ENST00000379433 LEO1Q8WVC0 666 aaPredicted RBP12.57□□□□□ -0.4
NEDD9-201ENST00000379433 BSDC1Q9NW68 430 aaPredicted RBP12.57□□□□□ -0.4
NEDD9-201ENST00000379433 MYO5AQ9Y4I1 1855 aaKnown RBP12.57□□□□□ -0.4
NEDD9-201ENST00000379433 NR1I2O75469 434 aa12.57□□□□□ -0.4
NEDD9-201ENST00000379433 MARCKSP29966 332 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms