RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 ECHDC1Q9NTX5 307 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 HMG20BQ9P0W2 317 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 SUPT6HQ7KZ85 1726 aaKnown RBP11.86□□□□□ -0.51
RTN3-206ENST00000377819 NDUFAB1O14561 156 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 ECM2O94769 699 aaPredicted RBP11.86□□□□□ -0.51
RTN3-206ENST00000377819 TNNI2P48788 182 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 ZC3H12CQ9C0D7 883 aaKnown RBP11.86□□□□□ -0.51
RTN3-206ENST00000377819 RTEL1Q9NZ71 1219 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 GUCA1BQ9UMX6 200 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 ITM2BQ9Y287 266 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 TNFAIP3P21580 790 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 GPTP24298 496 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 CLNS1AP54105 237 aaKnown RBP11.86□□□□□ -0.51
RTN3-206ENST00000377819 COG7P83436 770 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 RILPQ96NA2 401 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 PRAM1Q96QH2 718 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 SH2D4AQ9H788 454 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 EHBP1L1Q8N3D4 1523 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 PDE6AP16499 860 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 KIF11P52732 1056 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 NONOQ15233 471 aaKnown RBP eCLIP11.86□□□□□ -0.51
RTN3-206ENST00000377819 TAF7Q15545 349 aaPredicted RBP11.86□□□□□ -0.51
RTN3-206ENST00000377819 DCUN1D2Q6PH85 259 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 PNMA8AQ86V59 439 aaPredicted RBP11.86□□□□□ -0.51
RTN3-206ENST00000377819 PDZD8Q8NEN9 1154 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 SNRKQ9NRH2 765 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 HNRNPCL2B2RXH8 293 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 M0QZ92 97 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 HNRNPCL1O60812 293 aaKnown RBP11.85□□□□□ -0.51
RTN3-206ENST00000377819 GSTA1P08263 222 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 GSTA2P09210 222 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 PLCG2P16885 1265 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 POLD1P28340 1107 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 KRT9P35527 623 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 HAND2P61296 217 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 UBE2HP62256 183 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 RUFY4Q6ZNE9 571 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 NBPF5PQ86XG9 351 aaPredicted RBP11.85□□□□□ -0.51
RTN3-206ENST00000377819 MRRFQ96E11 262 aaKnown RBP11.85□□□□□ -0.51
RTN3-206ENST00000377819 SPDYE2BA6NHP3 402 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 SPDYE6P0CI01 402 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 TBCCQ15814 346 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 RTN1Q16799 776 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 FAM200AQ8TCP9 573 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 GBP5Q96PP8 586 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 BRD4O60885 1362 aaPredicted RBP11.85□□□□□ -0.51
RTN3-206ENST00000377819 OATP04181 439 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 PPP1R2P41236 205 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 DUSP27Q5VZP5 1158 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 Q9H521 79 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 VPS18Q9P253 973 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 ZBTB21Q9ULJ3 1066 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 FAF1Q9UNN5 650 aaPredicted RBP11.85□□□□□ -0.51
RTN3-206ENST00000377819 ANKRD30BQ9BXX2 1392 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 ADAMTS2O95450 1211 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 KRT15P19012 456 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 SLC4A8Q2Y0W8 1093 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 ZKSCAN3Q9BRR0 538 aa11.85□□□□□ -0.51
RTN3-206ENST00000377819 ZNF277Q9NRM2 450 aaPredicted RBP11.85□□□□□ -0.51
RTN3-206ENST00000377819 RNF10Q8N5U6 811 aaKnown RBP11.84□□□□□ -0.51
RTN3-206ENST00000377819 MORC4Q8TE76 937 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 ALG1Q9BT22 464 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 PICALMQ13492 652 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 PARD3BQ8TEW8 1205 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 CABS1Q96KC9 395 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 CABP1Q9NZU7 370 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 DBF4Q9UBU7 674 aaPredicted RBP11.84□□□□□ -0.51
RTN3-206ENST00000377819 NUP153P49790 1475 aaKnown RBP11.84□□□□□ -0.51
RTN3-206ENST00000377819 KLF18A0A0U1RQI7 1052 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 GOLGA6CA6NDK9 693 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 BUB1BO60566 1050 aaPredicted RBP11.84□□□□□ -0.51
RTN3-206ENST00000377819 GOLGA6DP0CG33 693 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.84□□□□□ -0.51
RTN3-206ENST00000377819 C4orf50Q6ZRC1 276 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 UBL4BQ8N7F7 174 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 GOLGA6AQ9NYA3 693 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 ASIC3Q9UHC3 531 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 CD2APQ9Y5K6 639 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 CD19P15391 556 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 XPAP23025 273 aaPredicted RBP11.84□□□□□ -0.51
RTN3-206ENST00000377819 WAPLQ7Z5K2 1190 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 MRPS27Q92552 414 aaKnown RBP11.84□□□□□ -0.51
RTN3-206ENST00000377819 CDCA7LQ96GN5 454 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 BACH2Q9BYV9 841 aa11.84□□□□□ -0.51
RTN3-206ENST00000377819 CDC42BPBQ9Y5S2 1711 aa11.83□□□□□ -0.51
RTN3-206ENST00000377819 FAM186BQ8IYM0 893 aa11.83□□□□□ -0.52
RTN3-206ENST00000377819 NOP56O00567 594 aaKnown RBP11.83□□□□□ -0.52
RTN3-206ENST00000377819 GJB2P29033 226 aa11.83□□□□□ -0.52
RTN3-206ENST00000377819 HSP90AA4PQ58FG1 418 aa11.83□□□□□ -0.52
RTN3-206ENST00000377819 CDAN1Q8IWY9 1227 aa11.83□□□□□ -0.52
RTN3-206ENST00000377819 HELBQ8NG08 1087 aaPredicted RBP11.83□□□□□ -0.52
RTN3-206ENST00000377819 NLRP3Q96P20 1036 aa11.83□□□□□ -0.52
RTN3-206ENST00000377819 TDRD9Q8NDG6 1382 aaKnown RBP11.83□□□□□ -0.52
RTN3-206ENST00000377819 NR1I2O75469 434 aa11.83□□□□□ -0.52
RTN3-206ENST00000377819 PYGLP06737 847 aa11.83□□□□□ -0.52
RTN3-206ENST00000377819 EPB41P11171 864 aaKnown RBP11.83□□□□□ -0.52
RTN3-206ENST00000377819 SYT1P21579 422 aa11.83□□□□□ -0.52
RTN3-206ENST00000377819 PPP2R1AP30153 589 aa11.83□□□□□ -0.52
RTN3-206ENST00000377819 HPDP32754 393 aaPredicted RBP11.83□□□□□ -0.52
RTN3-206ENST00000377819 TSTA3Q13630 321 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms