RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ATP6V1AP38606 617 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 TIMM10P62072 90 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 UBE2Q2Q8WVN8 375 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 AKR1B15C9JRZ8 316 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-203ENST00000372407 TNNI2P48788 182 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 RRP36Q96EU6 259 aaKnown RBP12.9□□□□□ -0.34
PTPRF-203ENST00000372407 EYA2O00167 538 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 ST5P78524 1137 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 PPP1R14CQ8TAE6 165 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 SMARCC2Q8TAQ2 1214 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 ZFP91Q96JP5 570 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-203ENST00000372407 RNMTO43148 476 aaKnown RBP12.9□□□□□ -0.34
PTPRF-203ENST00000372407 PHACTR2O75167 634 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 MCM7P33993 719 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 FAM173BQ6P4H8 233 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 TMEM87BQ96K49 555 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 STMN4Q9H169 189 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-203ENST00000372407 OGFRQ9NZT2 677 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 SNX14Q9Y5W7 946 aa12.9□□□□□ -0.34
PTPRF-203ENST00000372407 RNF123Q5XPI4 1314 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 MAP3K4Q9Y6R4 1608 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 RHOXF2BP0C7M4 288 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 PPP1R2P41236 205 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 GRIPAP1Q4V328 841 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 CAPZA3Q96KX2 299 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 RHOXF2Q9BQY4 288 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 SLC27A2O14975 620 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 ANO1Q5XXA6 986 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 ZNF622Q969S3 477 aaKnown RBP eCLIP12.89□□□□□ -0.35
PTPRF-203ENST00000372407 SPDYE3A6NKU9 549 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 ATP2A1O14983 1001 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 EVCP57679 992 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 TPTE2Q6XPS3 522 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 IQCGQ9H095 443 aaKnown RBP12.89□□□□□ -0.35
PTPRF-203ENST00000372407 CCDC122Q5T0U0 273 aa12.89□□□□□ -0.35
PTPRF-203ENST00000372407 ZNF772Q68DY9 489 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-203ENST00000372407 KIF1BO60333 1816 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 A0A1B0GUL7 405 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 PPP2R3AQ06190 1150 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 DBNDD2Q9BQY9 259 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 CLSTN2Q9H4D0 955 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 TRPC5Q9UL62 973 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-203ENST00000372407 MYOM2P54296 1465 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 VWA3AA6NCI4 1184 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 KIF4AO95239 1232 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 ZNF804AQ7Z570 1209 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 CCDC97Q96F63 343 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-203ENST00000372407 SYNCQ9H7C4 482 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 VPS18Q9P253 973 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 TRIM35Q9UPQ4 493 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 MBD4O95243 580 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 IMPG2Q9BZV3 1241 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 RBM28Q9NW13 759 aaKnown RBP12.88□□□□□ -0.35
PTPRF-203ENST00000372407 KCNH3Q9ULD8 1083 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 ANGEL1Q9UNK9 670 aaKnown RBP12.88□□□□□ -0.35
PTPRF-203ENST00000372407 MRVI1Q9Y6F6 885 aa12.88□□□□□ -0.35
PTPRF-203ENST00000372407 IL13P35225 146 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 TNNC1P63316 161 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 TBC1D8BQ0IIM8 1120 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 TNNI3KQ59H18 835 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 OTUD6BQ8N6M0 293 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 APPBP2Q92624 585 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 TTC14Q96N46 770 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 ZC3H12CQ9C0D7 883 aaKnown RBP12.87□□□□□ -0.35
PTPRF-203ENST00000372407 FPGT-TNNI3KV9GXZ4 949 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 TTLL12Q14166 644 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-203ENST00000372407 NBPF11Q86T75 865 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 ANKS4BQ8N8V4 417 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 PPP1R9BQ96SB3 815 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 RRAGDQ9NQL2 400 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-203ENST00000372407 PCDH11XQ9BZA7 1347 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 PCDH11YQ9BZA8 1340 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 F8W031 263 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-203ENST00000372407 DEXIO95424 95 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 CFAP58Q5T655 872 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 CCDC129Q6ZRS4 1044 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 IGSF22Q8N9C0 903 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 LEO1Q8WVC0 666 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-203ENST00000372407 NYXQ9GZU5 481 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 QTRT2Q9H974 415 aaKnown RBP12.87□□□□□ -0.35
PTPRF-203ENST00000372407 PICALMQ13492 652 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 HDXQ7Z353 690 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 OGFOD1Q8N543 542 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 TCHPQ9BT92 498 aa12.87□□□□□ -0.35
PTPRF-203ENST00000372407 NSFL1CQ9UNZ2 370 aaKnown RBP12.87□□□□□ -0.35
PTPRF-203ENST00000372407 B4E1Z4 1266 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 RPL13P26373 211 aaKnown RBP12.86□□□□□ -0.35
PTPRF-203ENST00000372407 PLCD1P51178 756 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 BRINP3Q76B58 766 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 KBTBD3Q8NAB2 608 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 TSNARE1Q96NA8 513 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 ZEB2O60315 1214 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 IGSF3O75054 1194 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 FAM13AO94988 1023 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 FMNL3Q8IVF7 1028 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 GPATCH11Q8N954 259 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 MLKLQ8NB16 471 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 METTL22Q9BUU2 404 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-203ENST00000372407 IQGAP3Q86VI3 1631 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 FAM135BQ49AJ0 1406 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms