RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 DDX10Q13206 875 aaKnown RBP5.99□□□□□ -1.45
UBE3D-202ENST00000369746 CCDC92Q53HC0 331 aaPredicted RBP5.99□□□□□ -1.45
UBE3D-202ENST00000369746 MSL1Q68DK7 614 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 OGFOD1Q8N543 542 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 MYRIPQ8NFW9 859 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 TMC2Q8TDI7 906 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 RMI1Q9H9A7 625 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 AS3MTQ9HBK9 375 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 ADARB2Q9NS39 739 aaKnown RBP5.99□□□□□ -1.45
UBE3D-202ENST00000369746 CWC25Q9NXE8 425 aaPredicted RBP5.99□□□□□ -1.45
UBE3D-202ENST00000369746 DDX56Q9NY93 547 aaKnown RBP5.99□□□□□ -1.45
UBE3D-202ENST00000369746 STXBP5LQ9Y2K9 1186 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 SYNRGQ9UMZ2 1314 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 IPO5O00410 1097 aaKnown RBP5.99□□□□□ -1.45
UBE3D-202ENST00000369746 TIMM44O43615 452 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 PRC1O43663 620 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 FAM160A1Q05DH4 1040 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 ERFEQ4G0M1 354 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 SAPCD2Q86UD0 394 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 DRC7Q8IY82 874 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 TAF4BQ92750 862 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 GDPD2Q9HCC8 539 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 ZCCHC17Q9NP64 241 aaKnown RBP5.99□□□□□ -1.45
UBE3D-202ENST00000369746 HDAC9Q9UKV0 1011 aa5.99□□□□□ -1.45
UBE3D-202ENST00000369746 COL2A1P02458 1487 aaPredicted RBP5.99□□□□□ -1.45
UBE3D-202ENST00000369746 LMOD1P29536 600 aaPredicted RBP5.98□□□□□ -1.45
UBE3D-202ENST00000369746 SIM2Q14190 667 aaPredicted RBP5.98□□□□□ -1.45
UBE3D-202ENST00000369746 SYCP1Q15431 976 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 SWT1Q5T5J6 900 aaKnown RBP5.98□□□□□ -1.45
UBE3D-202ENST00000369746 WDR75Q8IWA0 830 aaKnown RBP5.98□□□□□ -1.45
UBE3D-202ENST00000369746 VPS37AQ8NEZ2 397 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 DUSP9Q99956 384 aaKnown RBP5.98□□□□□ -1.45
UBE3D-202ENST00000369746 CD248Q9HCU0 757 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 ATG3Q9NT62 314 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 HPS5Q9UPZ3 1129 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 FAM205AQ6ZU69 1335 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 DDX11L8A8MPP1 907 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 SLC10A3P09131 477 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 NPR1P16066 1061 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 ATP6V1AP38606 617 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 DDR1Q08345 913 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 IFT88Q13099 833 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 ITPK1Q13572 414 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 CT47A1Q5JQC4 288 aaPredicted RBP5.98□□□□□ -1.45
UBE3D-202ENST00000369746 ZCCHC8Q6NZY4 707 aaKnown RBP5.98□□□□□ -1.45
UBE3D-202ENST00000369746 PCGF5Q86SE9 256 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 NBPF3Q9H094 633 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 KCNH6Q9H252 994 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 OGFRQ9NZT2 677 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 RABL2BQ9UNT1 228 aa5.98□□□□□ -1.45
UBE3D-202ENST00000369746 MYH14Q7Z406 1995 aaKnown RBP5.98□□□□□ -1.45
UBE3D-202ENST00000369746 ECEL1O95672 775 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 GUCY2CP25092 1073 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 RPS12P25398 132 aaKnown RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 ALDH1B1P30837 517 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 TM4SF4P48230 202 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 RBM5P52756 815 aaKnown RBP eCLIP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 CBLBQ13191 982 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 SKOR2Q2VWA4 1001 aaPredicted RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 UHMK1Q8TAS1 419 aaKnown RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 SNRNP27Q8WVK2 155 aaKnown RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 COG3Q96JB2 828 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 IFT122Q9HBG6 1241 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 PRKAG2Q9UGJ0 569 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 PHKG2P15735 406 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 NOP2P46087 812 aaKnown RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 EIF5P55010 431 aaKnown RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 HTRA3P83110 453 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 SAFB2Q14151 953 aaKnown RBP eCLIP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 E2F4Q16254 413 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 TMC1Q8TDI8 760 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 SLC39A13Q96H72 371 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 RTFDC1Q9BY42 306 aaPredicted RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 RETREG1Q9H6L5 497 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 ABCF2Q9UG63 623 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 PSME4Q14997 1843 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 CYP27B1O15528 508 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 SIPA1L3O60292 1781 aaPredicted RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 PPFIA3O75145 1194 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 ATG7O95352 703 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 SKILP12757 684 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 KCNA2P16389 499 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 PSMC1P62191 440 aaKnown RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 UBE4AQ14139 1066 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 DNAJC21Q5F1R6 531 aaKnown RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 C2CD5Q86YS7 1000 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 CLASRPQ8N2M8 674 aaKnown RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 DDX54Q8TDD1 881 aaKnown RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 CCDC34Q96HJ3 373 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 PCMTD1Q96MG8 357 aaPredicted RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 EPAS1Q99814 870 aa5.97□□□□□ -1.45
UBE3D-202ENST00000369746 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 SUDS3Q9H7L9 328 aaPredicted RBP5.97□□□□□ -1.45
UBE3D-202ENST00000369746 BICDL2A1A5D9 508 aa5.96□□□□□ -1.46
UBE3D-202ENST00000369746 TRIM64CA6NLI5 447 aa5.96□□□□□ -1.46
UBE3D-202ENST00000369746 FAM155AB1AL88 458 aaPredicted RBP5.96□□□□□ -1.46
UBE3D-202ENST00000369746 ZNF853P0CG23 659 aa5.96□□□□□ -1.46
UBE3D-202ENST00000369746 ODR4Q5SWX8 454 aa5.96□□□□□ -1.46
UBE3D-202ENST00000369746 ALKBH2Q6NS38 261 aa5.96□□□□□ -1.46
UBE3D-202ENST00000369746 ZNF771Q7L3S4 317 aaPredicted RBP5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms