RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 KCNQ4P56696 695 aa10.85□□□□□ -0.67
TPM3-213ENST00000368545 FKBP4Q02790 459 aaKnown RBP eCLIP10.85□□□□□ -0.67
TPM3-213ENST00000368545 POTEHQ6S545 545 aa10.85□□□□□ -0.67
TPM3-213ENST00000368545 PNMA8AQ86V59 439 aaPredicted RBP10.85□□□□□ -0.67
TPM3-213ENST00000368545 HHIPL1Q96JK4 782 aa10.85□□□□□ -0.67
TPM3-213ENST00000368545 BACH2Q9BYV9 841 aa10.85□□□□□ -0.67
TPM3-213ENST00000368545 PHAXQ9H814 394 aaKnown RBP10.85□□□□□ -0.67
TPM3-213ENST00000368545 RBM19Q9Y4C8 960 aaKnown RBP10.85□□□□□ -0.67
TPM3-213ENST00000368545 DLEC1Q9Y238 1755 aa10.85□□□□□ -0.67
TPM3-213ENST00000368545 F6X3S4 739 aa10.84□□□□□ -0.67
TPM3-213ENST00000368545 DDX58O95786 925 aaKnown RBP10.84□□□□□ -0.67
TPM3-213ENST00000368545 HINFPQ9BQA5 517 aa10.84□□□□□ -0.67
TPM3-213ENST00000368545 NUDT12Q9BQG2 462 aa10.84□□□□□ -0.67
TPM3-213ENST00000368545 PCDHGA11Q9Y5H2 935 aa10.84□□□□□ -0.67
TPM3-213ENST00000368545 GNAI3P08754 354 aa10.84□□□□□ -0.67
TPM3-213ENST00000368545 EAPPQ56P03 285 aaPredicted RBP10.84□□□□□ -0.67
TPM3-213ENST00000368545 PURBQ96QR8 312 aaKnown RBP10.84□□□□□ -0.67
TPM3-213ENST00000368545 LOC102724428A0A0B4J2F2 783 aa10.83□□□□□ -0.68
TPM3-213ENST00000368545 PRAMEF22A3QJZ6 481 aa10.83□□□□□ -0.68
TPM3-213ENST00000368545 BHMG1C9JSJ3 638 aaPredicted RBP10.83□□□□□ -0.68
TPM3-213ENST00000368545 SIK1P57059 783 aa10.83□□□□□ -0.68
TPM3-213ENST00000368545 ZBTB33Q86T24 672 aa10.83□□□□□ -0.68
TPM3-213ENST00000368545 RPAP2Q8IXW5 612 aaPredicted RBP10.83□□□□□ -0.68
TPM3-213ENST00000368545 SMC5Q8IY18 1101 aa10.83□□□□□ -0.68
TPM3-213ENST00000368545 DNAAF4Q8WXU2 420 aa10.83□□□□□ -0.68
TPM3-213ENST00000368545 NBPF3Q9H094 633 aa10.83□□□□□ -0.68
TPM3-213ENST00000368545 DZIP3Q86Y13 1208 aaKnown RBP10.82□□□□□ -0.68
TPM3-213ENST00000368545 LRCH3Q96II8 777 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 PRR14Q9BWN1 585 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 IBTKQ9P2D0 1353 aaPredicted RBP10.82□□□□□ -0.68
TPM3-213ENST00000368545 PI4KAP2A4QPH2 592 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 POTECB2RU33 542 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 RPS6KA4O75676 772 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 RFC4P35249 363 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 COL19A1Q14993 1142 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 KSR2Q6VAB6 950 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 RGL4Q8IZJ4 473 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 PI4KAP1Q8N8J0 262 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 UBXN4Q92575 508 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 MEIS3Q99687 375 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 SRCIN1Q9C0H9 1055 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 ARFGEF2Q9Y6D5 1785 aa10.82□□□□□ -0.68
TPM3-213ENST00000368545 ERCC5P28715 1186 aaPredicted RBP10.81□□□□□ -0.68
TPM3-213ENST00000368545 PROSER3Q2NL68 480 aa10.81□□□□□ -0.68
TPM3-213ENST00000368545 SH3BP5LQ7L8J4 393 aa10.81□□□□□ -0.68
TPM3-213ENST00000368545 TTLL6Q8N841 843 aa10.81□□□□□ -0.68
TPM3-213ENST00000368545 ANKRD44Q8N8A2 993 aa10.81□□□□□ -0.68
TPM3-213ENST00000368545 ANXA1P04083 346 aa10.81□□□□□ -0.68
TPM3-213ENST00000368545 GNAI2P04899 355 aa10.81□□□□□ -0.68
TPM3-213ENST00000368545 WEE1P30291 646 aa10.81□□□□□ -0.68
TPM3-213ENST00000368545 PIGBQ92521 554 aa10.81□□□□□ -0.68
TPM3-213ENST00000368545 TEX13AQ9BXU3 409 aaPredicted RBP10.81□□□□□ -0.68
TPM3-213ENST00000368545 USP16Q9Y5T5 823 aa10.81□□□□□ -0.68
TPM3-213ENST00000368545 HMMRO75330 724 aa10.8□□□□□ -0.68
TPM3-213ENST00000368545 ALDH1L1O75891 902 aa10.8□□□□□ -0.68
TPM3-213ENST00000368545 DXOO77932 396 aaKnown RBP10.8□□□□□ -0.68
TPM3-213ENST00000368545 DGKZQ13574 1117 aa10.8□□□□□ -0.68
TPM3-213ENST00000368545 MRPL58Q14197 206 aaKnown RBP10.8□□□□□ -0.68
TPM3-213ENST00000368545 BEND3Q5T5X7 828 aa10.8□□□□□ -0.68
TPM3-213ENST00000368545 CEP85Q6P2H3 762 aa10.8□□□□□ -0.68
TPM3-213ENST00000368545 TSEN2Q8NCE0 465 aaKnown RBP10.8□□□□□ -0.68
TPM3-213ENST00000368545 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.8□□□□□ -0.68
TPM3-213ENST00000368545 SAGE1Q9NXZ1 904 aa10.8□□□□□ -0.68
TPM3-213ENST00000368545 AFDNP55196 1824 aaKnown RBP10.8□□□□□ -0.68
TPM3-213ENST00000368545 ITGBL1O95965 494 aaPredicted RBP10.79□□□□□ -0.68
TPM3-213ENST00000368545 P4HBP07237 508 aaKnown RBP10.79□□□□□ -0.68
TPM3-213ENST00000368545 GYS1P13807 737 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 PKN2Q16513 984 aaKnown RBP10.79□□□□□ -0.68
TPM3-213ENST00000368545 LINC00116Q8NCU8 138 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 SPATA32Q96LK8 384 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 HDAC5Q9UQL6 1122 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 MAP3K2Q9Y2U5 619 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 UBTFL1P0CB47 393 aaPredicted RBP10.79□□□□□ -0.68
TPM3-213ENST00000368545 MYL6BP14649 208 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 RGS3P49796 1198 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 HDLBPQ00341 1268 aaKnown RBP10.79□□□□□ -0.68
TPM3-213ENST00000368545 LRP10Q7Z4F1 713 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 SIRT2Q8IXJ6 389 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 FAM160A2Q8N612 972 aaPredicted RBP10.79□□□□□ -0.68
TPM3-213ENST00000368545 SCUBE2Q9NQ36 999 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 PRDM9Q9NQV7 894 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 ADAMTSL1Q8N6G6 1762 aa10.79□□□□□ -0.68
TPM3-213ENST00000368545 PTCD1O75127 700 aaKnown RBP10.78□□□□□ -0.68
TPM3-213ENST00000368545 NR1I2O75469 434 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 NUCB1Q02818 461 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 SF3A1Q15459 793 aaKnown RBP10.78□□□□□ -0.68
TPM3-213ENST00000368545 ATG3Q9NT62 314 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 TJP1Q07157 1748 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 LTBP1Q14766 1721 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 NEXNQ0ZGT2 675 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 NAA30Q147X3 362 aaPredicted RBP10.78□□□□□ -0.68
TPM3-213ENST00000368545 LDLRAD1Q5T700 205 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 LINS1Q8NG48 757 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 XAGE3Q8WTP9 111 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 CAPNS2Q96L46 248 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 USP44Q9H0E7 712 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 TAF1DQ9H5J8 278 aaPredicted RBP10.78□□□□□ -0.68
TPM3-213ENST00000368545 ASAP1Q9ULH1 1129 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 PCDHB3Q9Y5E6 796 aa10.78□□□□□ -0.68
TPM3-213ENST00000368545 MAGEB6P1A0A0J9YX57 407 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms