RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 LOXL4Q96JB6 756 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 SLC4A9Q96Q91 983 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 CDCA3Q99618 268 aaPredicted RBP2.25□□□□□ -2.05
LINC00643-201ENST00000334389 HIRIP3Q9BW71 556 aaPredicted RBP2.25□□□□□ -2.05
LINC00643-201ENST00000334389 KRTAP4-2Q9BYR5 136 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 SEMA6BQ9H3T3 888 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 TMOD3Q9NYL9 352 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 ZNFX1Q9P2E3 1918 aaKnown RBP2.25□□□□□ -2.05
LINC00643-201ENST00000334389 SMYD5Q6GMV2 418 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 PRPF40BQ6NWY9 871 aaKnown RBP2.25□□□□□ -2.05
LINC00643-201ENST00000334389 NEK9Q8TD19 979 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 ASIC4Q96FT7 647 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 LRFN3Q9BTN0 628 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 ZFYVE28Q9HCC9 887 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 C11orf16Q9NQ32 467 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 RAPGEFL1Q9UHV5 662 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 MYH8P13535 1937 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 DOCK5Q9H7D0 1870 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 H0YGN5 161 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 ZEB2O60315 1214 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 TLR2O60603 784 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 CRKLP46109 303 aaKnown RBP2.25□□□□□ -2.05
LINC00643-201ENST00000334389 PUM1Q14671 1186 aaKnown RBP eCLIP2.25□□□□□ -2.05
LINC00643-201ENST00000334389 PSRC1Q6PGN9 363 aaPredicted RBP2.25□□□□□ -2.05
LINC00643-201ENST00000334389 IGF2-ASQ6U949 168 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 PODNQ7Z5L7 613 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 UBALD2Q8IYN6 164 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 SYNE4Q8N205 404 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 UBN2Q6ZU65 1347 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 TNRC18O15417 2968 aaPredicted RBP2.24□□□□□ -2.05
LINC00643-201ENST00000334389 WDHD1O75717 1129 aaPredicted RBP2.24□□□□□ -2.05
LINC00643-201ENST00000334389 EYA4O95677 639 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 CETPP11597 493 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 PMLP29590 882 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 COL9A3Q14050 684 aaPredicted RBP2.24□□□□□ -2.05
LINC00643-201ENST00000334389 ZNF746Q6NUN9 644 aaPredicted RBP2.24□□□□□ -2.05
LINC00643-201ENST00000334389 MORC4Q8TE76 937 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 HDAC7Q8WUI4 952 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 NXPE3Q969Y0 559 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 CDCA5Q96FF9 252 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 TESK2Q96S53 571 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 TINF2Q9BSI4 451 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 C11orf49Q9H6J7 331 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 NID2Q14112 1375 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 RNF113AO15541 343 aaKnown RBP2.24□□□□□ -2.05
LINC00643-201ENST00000334389 PROS1P07225 676 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 IL1R1P14778 569 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 HOXA7P31268 230 aaPredicted RBP2.24□□□□□ -2.05
LINC00643-201ENST00000334389 PRIM1P49642 420 aaKnown RBP2.24□□□□□ -2.05
LINC00643-201ENST00000334389 MRE11P49959 708 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 COASYQ13057 564 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 STRIP1Q5VSL9 837 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 CIAPIN1Q6FI81 312 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 ZNF790Q6PG37 636 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 NECAB2Q7Z6G3 386 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 TICAM1Q8IUC6 712 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 ZDHHC14Q8IZN3 488 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 TMEM151AQ8N4L1 468 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 SAMD3Q8N6K7 520 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 MAFAQ8NHW3 353 aaPredicted RBP2.24□□□□□ -2.05
LINC00643-201ENST00000334389 PI4K2BQ8TCG2 481 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 PAWRQ96IZ0 340 aaKnown RBP2.24□□□□□ -2.05
LINC00643-201ENST00000334389 B3GNT4Q9C0J1 378 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 POGKQ9P215 609 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 PNMA2Q9UL42 364 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 FAN1Q9Y2M0 1017 aa2.24□□□□□ -2.05
LINC00643-201ENST00000334389 CCDC85CA6NKD9 419 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 TREHO43280 583 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 WEE1P30291 646 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 RFC4P35249 363 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 CCR10P46092 362 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 LACTBP83111 547 aaPredicted RBP2.23□□□□□ -2.05
LINC00643-201ENST00000334389 MYT1Q01538 1121 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 SP3Q02447 781 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 SHROOM1Q2M3G4 852 aaPredicted RBP2.23□□□□□ -2.05
LINC00643-201ENST00000334389 RGL3Q3MIN7 710 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 ERFEQ4G0M1 354 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 POTEEQ6S8J3 1075 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 NIM1KQ8IY84 436 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 SERPINA10Q9UK55 444 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 FBXO4Q9UKT5 387 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 MAST3O60307 1309 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 A0A0G2JLL6 359 aaPredicted RBP2.23□□□□□ -2.05
LINC00643-201ENST00000334389 CABYRO75952 493 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 NTSR2O95665 410 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 HMGCRP04035 888 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 LORP23490 312 aaPredicted RBP2.23□□□□□ -2.05
LINC00643-201ENST00000334389 CLCN5P51795 746 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 GOLGA2Q08379 1002 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 GRAPQ13588 217 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 PHLDB3Q6NSJ2 640 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 RSBN1LQ6PCB5 846 aaPredicted RBP2.23□□□□□ -2.05
LINC00643-201ENST00000334389 PRRT2Q7Z6L0 340 aaPredicted RBP2.23□□□□□ -2.05
LINC00643-201ENST00000334389 RPAINQ86UA6 219 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 ZSCAN1Q8NBB4 408 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 GRAPLQ8TC17 118 aaPredicted RBP2.23□□□□□ -2.05
LINC00643-201ENST00000334389 RASGRP4Q8TDF6 673 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 SLC9A7Q96T83 725 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 ADAMTS5Q9UNA0 930 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 JAG2Q9Y219 1238 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 195 ms