RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 DHX58Q96C10 678 aa13.53□□□□□ -0.24
SHMT2-201ENST00000328923 IRX2Q9BZI1 471 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-201ENST00000328923 CENPHQ9H3R5 247 aa13.53□□□□□ -0.24
SHMT2-201ENST00000328923 KLC4Q9NSK0 619 aa13.53□□□□□ -0.24
SHMT2-201ENST00000328923 SAMM50Q9Y512 469 aa13.53□□□□□ -0.24
SHMT2-201ENST00000328923 RAB11FIP3O75154 756 aa13.52□□□□□ -0.24
SHMT2-201ENST00000328923 MYSM1Q5VVJ2 828 aa13.52□□□□□ -0.24
SHMT2-201ENST00000328923 KAT14Q9H8E8 782 aa13.52□□□□□ -0.24
SHMT2-201ENST00000328923 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.52□□□□□ -0.24
SHMT2-201ENST00000328923 ZNF232Q9UNY5 417 aa13.52□□□□□ -0.24
SHMT2-201ENST00000328923 NPHP3Q7Z494 1330 aa13.52□□□□□ -0.24
SHMT2-201ENST00000328923 TMEM94Q12767 1356 aa13.52□□□□□ -0.24
SHMT2-201ENST00000328923 DCCP43146 1447 aa13.52□□□□□ -0.24
SHMT2-201ENST00000328923 VWA3AA6NCI4 1184 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 CCP110O43303 1012 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 GNG11P61952 73 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 KCNB1Q14721 858 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 PDCD2Q16342 344 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-201ENST00000328923 CEP85LQ5SZL2 805 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 TLDC1Q6P9B6 456 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 CCDC83Q8IWF9 413 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 AOPEPQ8N6M6 819 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 ABTB2Q8N961 1025 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 MPHOSPH8Q99549 860 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 SCAND2PQ9GZW5 306 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-201ENST00000328923 PICK1Q9NRD5 415 aa13.52□□□□□ -0.25
SHMT2-201ENST00000328923 TFIP11Q9UBB9 837 aaKnown RBP13.52□□□□□ -0.25
SHMT2-201ENST00000328923 MAFGO15525 162 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 ERLIN1O75477 346 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 PRPF6O94906 941 aaKnown RBP13.51□□□□□ -0.25
SHMT2-201ENST00000328923 FSBPO95073 299 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 SYF2O95926 243 aaKnown RBP13.51□□□□□ -0.25
SHMT2-201ENST00000328923 PDCP20941 246 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 AMPHP49418 695 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 PSME1Q06323 249 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 BICD2Q8TD16 824 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 FBXW7Q969H0 707 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 MIS18AQ9NYP9 233 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 LMCD1Q9NZU5 365 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 PNMA6EA0A0J9YXQ4 647 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 NRDCO43847 1150 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 SHOX2O60902 331 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-201ENST00000328923 RPSAP08865 295 aaKnown RBP13.51□□□□□ -0.25
SHMT2-201ENST00000328923 CHMP4BP1P59074 171 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 STX1AQ16623 288 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 SLC4A10Q6U841 1118 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 ARMCX6Q7L4S7 300 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 RASEFQ8IZ41 740 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 BCAS4Q8TDM0 211 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 XPO4Q9C0E2 1151 aaKnown RBP13.51□□□□□ -0.25
SHMT2-201ENST00000328923 KDM4CQ9H3R0 1056 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 RAB21Q9UL25 225 aa13.51□□□□□ -0.25
SHMT2-201ENST00000328923 CDHR2Q9BYE9 1310 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 ROBO1Q9Y6N7 1651 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 PPFIA2O75334 1257 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 PDHBP11177 359 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 IRAK1P51617 712 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 CNTROBQ8N137 903 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 IGSF22Q8N9C0 903 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 PI4K2BQ8TCG2 481 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 SPATA32Q96LK8 384 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 PUF60Q9UHX1 559 aaKnown RBP13.5□□□□□ -0.25
SHMT2-201ENST00000328923 PPP1R12BO60237 982 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-201ENST00000328923 LMBR1Q8WVP7 490 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 SMARCC1Q92922 1105 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-201ENST00000328923 SAAL1Q96ER3 474 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 UTP14AQ9BVJ6 771 aaKnown RBP13.5□□□□□ -0.25
SHMT2-201ENST00000328923 ZSWIM6Q9HCJ5 1215 aa13.5□□□□□ -0.25
SHMT2-201ENST00000328923 BIN2Q9UBW5 565 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-201ENST00000328923 USP42Q9H9J4 1324 aaKnown RBP13.49□□□□□ -0.25
SHMT2-201ENST00000328923 F6X3S4 739 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 VSNL1P62760 191 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 ESCO1Q5FWF5 840 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 THEMIS2Q5TEJ8 643 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 CDC37L1Q7L3B6 337 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 G2E3Q7L622 706 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 SSH3Q8TE77 659 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 RIN2Q8WYP3 895 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-201ENST00000328923 CRACR2AQ9BSW2 395 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 SUDS3Q9H7L9 328 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-201ENST00000328923 IFNKQ9P0W0 207 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 MAP3K5Q99683 1374 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 WDHD1O75717 1129 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-201ENST00000328923 ABCD1P33897 745 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 E2F5Q15329 346 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 KIFC2Q96AC6 838 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 PGBD1Q96JS3 809 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 C19orf44Q9H6X5 657 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 CHCHD3Q9NX63 227 aaKnown RBP13.49□□□□□ -0.25
SHMT2-201ENST00000328923 LRRC37A3O60309 1634 aa13.49□□□□□ -0.25
SHMT2-201ENST00000328923 KDRP35968 1356 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 RHOXF2BP0C7M4 288 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 RHOXF2Q9BQY4 288 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 RTEL1Q9NZ71 1219 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 IGSF1Q8N6C5 1336 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 SHTN1A0MZ66 631 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 PYGBP11216 843 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 HOXC9P31274 260 aa13.48□□□□□ -0.25
SHMT2-201ENST00000328923 GBP2P32456 591 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-201ENST00000328923 PRPHP41219 470 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms