RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 IQUBQ8NA54 791 aa16.77■□□□□ 0.28
TCOF1-201ENST00000323668 TAF4BQ92750 862 aa16.77■□□□□ 0.28
TCOF1-201ENST00000323668 KRT2P35908 639 aa16.77■□□□□ 0.28
TCOF1-201ENST00000323668 PPP2R3AQ06190 1150 aa16.77■□□□□ 0.28
TCOF1-201ENST00000323668 RAB34Q9BZG1 259 aa16.77■□□□□ 0.28
TCOF1-201ENST00000323668 CENPHQ9H3R5 247 aa16.77■□□□□ 0.28
TCOF1-201ENST00000323668 JADE2Q9NQC1 790 aa16.77■□□□□ 0.28
TCOF1-201ENST00000323668 RNF216Q9NWF9 866 aaPredicted RBP16.77■□□□□ 0.28
TCOF1-201ENST00000323668 ETF1P62495 437 aaKnown RBP16.77■□□□□ 0.27
TCOF1-201ENST00000323668 FAM114A1Q8IWE2 563 aa16.77■□□□□ 0.27
TCOF1-201ENST00000323668 CCDC43Q96MW1 224 aaKnown RBP16.77■□□□□ 0.27
TCOF1-201ENST00000323668 MYL10Q9BUA6 226 aa16.77■□□□□ 0.27
TCOF1-201ENST00000323668 FTOQ9C0B1 505 aaKnown RBP eCLIP16.77■□□□□ 0.272e-6■□□□□ 9.3
TCOF1-201ENST00000323668 TCEAL9Q9UHQ7 104 aa16.77■□□□□ 0.27
TCOF1-201ENST00000323668 CYLC1P35663 651 aaPredicted RBP16.76■□□□□ 0.27
TCOF1-201ENST00000323668 PTPN12Q05209 780 aaKnown RBP16.76■□□□□ 0.27
TCOF1-201ENST00000323668 CALM1P0DP23 149 aa16.76■□□□□ 0.27
TCOF1-201ENST00000323668 CALM2P0DP24 149 aa16.76■□□□□ 0.27
TCOF1-201ENST00000323668 CALM3P0DP25 149 aa16.76■□□□□ 0.27
TCOF1-201ENST00000323668 ADD1P35611 737 aaKnown RBP16.76■□□□□ 0.27
TCOF1-201ENST00000323668 ERCC6LQ2NKX8 1250 aa16.76■□□□□ 0.27
TCOF1-201ENST00000323668 IGSF22Q8N9C0 903 aa16.76■□□□□ 0.27
TCOF1-201ENST00000323668 CRNKL1Q9BZJ0 848 aaKnown RBP16.76■□□□□ 0.27
TCOF1-201ENST00000323668 RTL9Q8NET4 1388 aa16.76■□□□□ 0.27
TCOF1-201ENST00000323668 PSMA7O14818 248 aa16.76■□□□□ 0.27
TCOF1-201ENST00000323668 MYO1BO43795 1136 aa16.76■□□□□ 0.27
TCOF1-201ENST00000323668 TOB2Q14106 344 aaPredicted RBP16.76■□□□□ 0.27
TCOF1-201ENST00000323668 LRRC24Q50LG9 513 aa16.76■□□□□ 0.27
TCOF1-201ENST00000323668 KAT6BQ8WYB5 2073 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 NEURL4Q96JN8 1562 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 TTLL7Q6ZT98 887 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 DZIP3Q86Y13 1208 aaKnown RBP16.75■□□□□ 0.27
TCOF1-201ENST00000323668 TSG101Q99816 390 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 CLIC4Q9Y696 253 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 CTR9Q6PD62 1173 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 GPR108Q9NPR9 543 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 MAGEB6P1A0A0J9YX57 407 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 ERLIN2O94905 339 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 TUBBP07437 444 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 IDEP14735 1019 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 PNOCQ13519 176 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 TDRD12Q587J7 1177 aaKnown RBP16.75■□□□□ 0.27
TCOF1-201ENST00000323668 MAPK8IP2Q13387 824 aaPredicted RBP16.75■□□□□ 0.27
TCOF1-201ENST00000323668 POSTNQ15063 836 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 CALML4Q96GE6 196 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 SPTLC3Q9NUV7 552 aa16.75■□□□□ 0.27
TCOF1-201ENST00000323668 A0A087WWV3 80 aa16.74■□□□□ 0.27
TCOF1-201ENST00000323668 CKAP4Q07065 602 aaKnown RBP16.74■□□□□ 0.27
TCOF1-201ENST00000323668 TMEM266Q2M3C6 531 aa16.74■□□□□ 0.27
TCOF1-201ENST00000323668 CT47A1Q5JQC4 288 aaPredicted RBP16.74■□□□□ 0.27
TCOF1-201ENST00000323668 PODXL2Q9NZ53 605 aa16.74■□□□□ 0.27
TCOF1-201ENST00000323668 SHTN1A0MZ66 631 aa16.74■□□□□ 0.27
TCOF1-201ENST00000323668 PSDA5PKW4 1024 aaPredicted RBP16.74■□□□□ 0.27
TCOF1-201ENST00000323668 SAMD1Q6SPF0 538 aaPredicted RBP16.74■□□□□ 0.27
TCOF1-201ENST00000323668 ALS2CR12Q96Q35 445 aa16.74■□□□□ 0.27
TCOF1-201ENST00000323668 MYO3AQ8NEV4 1616 aa16.74■□□□□ 0.27
TCOF1-201ENST00000323668 AKR1B10O60218 316 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 CALML3P27482 149 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 TCIRG1Q13488 830 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 ARMT1Q9H993 441 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 ZNF532Q9HCE3 1301 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 PUM3Q15397 648 aaKnown RBP16.73■□□□□ 0.27
TCOF1-201ENST00000323668 DPCR1Q3MIW9 517 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 SPECC1LQ69YQ0 1117 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 ANKRD18AQ8IVF6 992 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 VWA3AA6NCI4 1184 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 PGBD1Q96JS3 809 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 POLR3EQ9NVU0 708 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 GUCA1BQ9UMX6 200 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 STX8Q9UNK0 236 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 CARMIL3Q8ND23 1372 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 LINC00301Q8NCQ3 95 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.73■□□□□ 0.272e-7■■■■■ 35.6
TCOF1-201ENST00000323668 USP31Q70CQ4 1352 aa16.73■□□□□ 0.27
TCOF1-201ENST00000323668 RHOXF2BP0C7M4 288 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 UBXN1Q04323 297 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 ODF2Q5BJF6 829 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 RHOXF2Q9BQY4 288 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 EXOC1Q9NV70 894 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 LUC7L2Q9Y383 392 aaKnown RBP16.72■□□□□ 0.27
TCOF1-201ENST00000323668 IGKV5-2P06315 115 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 RDXP35241 583 aaKnown RBP16.72■□□□□ 0.27
TCOF1-201ENST00000323668 GNAQP50148 359 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 KRT83P78385 493 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 RPAP1Q9BWH6 1393 aaPredicted RBP16.72■□□□□ 0.27
TCOF1-201ENST00000323668 COL3A1P02461 1466 aaPredicted RBP16.72■□□□□ 0.27
TCOF1-201ENST00000323668 KRT86O43790 486 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 CAPN2P17655 700 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 ZNF174Q15697 407 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 IL25Q9H293 177 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 KCNJ14Q9UNX9 436 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 MAST3O60307 1309 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 SH3TC1Q8TE82 1336 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 CCT6AP40227 531 aaKnown RBP16.72■□□□□ 0.27
TCOF1-201ENST00000323668 DNA2P51530 1060 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 SLC39A14Q15043 492 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 SYCP1Q15431 976 aa16.72■□□□□ 0.27
TCOF1-201ENST00000323668 ANKIB1Q9P2G1 1089 aa16.71■□□□□ 0.27
TCOF1-201ENST00000323668 MCM7P33993 719 aa16.71■□□□□ 0.27
TCOF1-201ENST00000323668 VWDEQ8N2E2 1590 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 735.5 ms