RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CYB5R4Q7L1T6 521 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 CCDC150Q8NCX0 1101 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 DPF2Q92785 391 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 NAPBQ9H115 298 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 GREM2Q9H772 168 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 GPR108Q9NPR9 543 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 MCAMP43121 646 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 TCIRG1Q13488 830 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 SAFBQ15424 915 aaKnown RBP eCLIP14.57□□□□□ -0.08
LIG1-201ENST00000263274 MB21D2Q8IYB1 491 aaPredicted RBP14.57□□□□□ -0.08
LIG1-201ENST00000263274 CPLX3Q8WVH0 158 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 UBXN4Q92575 508 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 ERO1AQ96HE7 468 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 POLR3EQ9NVU0 708 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 SLC12A7Q9Y666 1083 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 ARHGAP29Q52LW3 1261 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 CCDC102BQ68D86 513 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 TRMT44Q8IYL2 757 aaKnown RBP14.57□□□□□ -0.08
LIG1-201ENST00000263274 AGXT2Q9BYV1 514 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 ST7Q9NRC1 585 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 FANCLQ9NW38 375 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 ZNF532Q9HCE3 1301 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 FOXN1O15353 648 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 CDC27P30260 824 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 TBC1D10CQ8IV04 446 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 LRRN4CLQ8ND94 238 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 ZSWIM4Q9H7M6 989 aa14.57□□□□□ -0.08
LIG1-201ENST00000263274 TMEM232C9JQI7 657 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 CDKL5O76039 1030 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 CMA1P23946 247 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 KRT222Q8N1A0 295 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 ASAP1Q9ULH1 1129 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 SALL1Q9NSC2 1324 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 ANKRD18BA2A2Z9 1011 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 PHKA1P46020 1223 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 TDO2P48775 406 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 NYAP1Q6ZVC0 841 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 NKX2-3Q8TAU0 364 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 MROH7-TTC4A0A0A0MT08 1334 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 SLC39A14Q15043 492 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 WWC3Q9ULE0 1092 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 PCDHA5Q9Y5H7 936 aa14.56□□□□□ -0.08
LIG1-201ENST00000263274 hCG_1642624A0A1W2PR95 340 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 MINDY4BA8MYZ0 360 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 BTBD18B2RXH4 712 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 POLR3GO15318 223 aaPredicted RBP14.55□□□□□ -0.08
LIG1-201ENST00000263274 MYL5Q02045 173 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 SSRP1Q08945 709 aaKnown RBP14.55□□□□□ -0.08
LIG1-201ENST00000263274 LONRF3Q496Y0 759 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 GRAMD1CQ8IYS0 662 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 KIF2AO00139 706 aaPredicted RBP14.55□□□□□ -0.08
LIG1-201ENST00000263274 HLFQ16534 295 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 APOA5Q6Q788 366 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 MAGEB6Q8N7X4 407 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 MIGA1Q8NAN2 632 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 ARMT1Q9H993 441 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 PIH1D3Q9NQM4 214 aaKnown RBP14.55□□□□□ -0.08
LIG1-201ENST00000263274 DDX41Q9UJV9 622 aaKnown RBP14.55□□□□□ -0.08
LIG1-201ENST00000263274 KCNH3Q9ULD8 1083 aa14.55□□□□□ -0.08
LIG1-201ENST00000263274 RFX7Q2KHR2 1363 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 AXDND1Q5T1B0 1012 aaPredicted RBP14.54□□□□□ -0.08
LIG1-201ENST00000263274 EPC1Q9H2F5 836 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 IMPACTQ9P2X3 320 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 MARF1Q9Y4F3 1742 aaKnown RBP14.54□□□□□ -0.08
LIG1-201ENST00000263274 IRS4O14654 1257 aaPredicted RBP14.54□□□□□ -0.08
LIG1-201ENST00000263274 FOXP2O15409 715 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 ADKP55263 362 aaKnown RBP14.54□□□□□ -0.08
LIG1-201ENST00000263274 STX17P56962 302 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 GNG11P61952 73 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 SHC4Q6S5L8 630 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 SLAIN2Q9P270 581 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 PCDH11XQ9BZA7 1347 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 PCDH11YQ9BZA8 1340 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 ERICH2A1L162 156 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 POLR2DO15514 142 aaKnown RBP14.54□□□□□ -0.08
LIG1-201ENST00000263274 CBFA2T2O43439 604 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 CIAO1O76071 339 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 MBD4O95243 580 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 TRERF1Q96PN7 1200 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 CARD6Q9BX69 1037 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 ABCF2Q9UG63 623 aa14.54□□□□□ -0.08
LIG1-201ENST00000263274 IL2RBP14784 551 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 AFMP43652 599 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 KARSQ15046 597 aaKnown RBP14.53□□□□□ -0.08
LIG1-201ENST00000263274 TEX35Q5T0J7 233 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 OVOS2A0A0G2JMS6 1433 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 LMO7Q8WWI1 1683 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 STARD3NLO95772 234 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 AKAP17AQ02040 695 aaKnown RBP14.53□□□□□ -0.08
LIG1-201ENST00000263274 TAF3Q5VWG9 929 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 CADPS2Q86UW7 1296 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 TRIM22Q8IYM9 498 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 OSBPL5Q9H0X9 879 aaPredicted RBP14.53□□□□□ -0.08
LIG1-201ENST00000263274 MPHOSPH8Q99549 860 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 C1orf167Q5SNV9 1468 aa14.53□□□□□ -0.08
LIG1-201ENST00000263274 NUTM2BA6NNL0 878 aaPredicted RBP14.52□□□□□ -0.08
LIG1-201ENST00000263274 NUTM2EB1AL46 878 aaPredicted RBP14.52□□□□□ -0.08
LIG1-201ENST00000263274 PRKAB2O43741 272 aa14.52□□□□□ -0.08
LIG1-201ENST00000263274 PDE6AP16499 860 aa14.52□□□□□ -0.08
LIG1-201ENST00000263274 NUTM2AQ8IVF1 878 aaPredicted RBP14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms