RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 DZIP1Q86YF9 867 aaKnown RBP28.21■■■□□ 2.11
LSM4-201ENST00000252816 ZNF384Q8TF68 577 aa28.21■■■□□ 2.11
LSM4-201ENST00000252816 TSKSQ9UJT2 592 aa28.21■■■□□ 2.11
LSM4-201ENST00000252816 GAKO14976 1311 aa28.2■■■□□ 2.11
LSM4-201ENST00000252816 HMMRO75330 724 aa28.2■■■□□ 2.1
LSM4-201ENST00000252816 CCDC158Q5M9N0 1113 aa28.2■■■□□ 2.1
LSM4-201ENST00000252816 ERICH6Q7L0X2 663 aa28.2■■■□□ 2.1
LSM4-201ENST00000252816 ERC1Q8IUD2 1116 aa28.2■■■□□ 2.1
LSM4-201ENST00000252816 CLMNQ96JQ2 1002 aa28.2■■■□□ 2.1
LSM4-201ENST00000252816 CSRNP1Q96S65 589 aa28.2■■■□□ 2.1
LSM4-201ENST00000252816 PRDM10Q9NQV6 1147 aa28.2■■■□□ 2.1
LSM4-201ENST00000252816 MECOMQ03112 1051 aa28.19■■■□□ 2.1
LSM4-201ENST00000252816 SNRKQ9NRH2 765 aa28.19■■■□□ 2.1
LSM4-201ENST00000252816 NFIAQ12857 509 aa28.18■■■□□ 2.1
LSM4-201ENST00000252816 MKRN3Q13064 507 aaKnown RBP28.18■■■□□ 2.1
LSM4-201ENST00000252816 HSP90AB4PQ58FF6 505 aa28.18■■■□□ 2.1
LSM4-201ENST00000252816 FAM163AQ96GL9 167 aaPredicted RBP28.18■■■□□ 2.1
LSM4-201ENST00000252816 USP40Q9NVE5 1235 aa28.18■■■□□ 2.1
LSM4-201ENST00000252816 MYH2Q9UKX2 1941 aa28.18■■■□□ 2.1
LSM4-201ENST00000252816 CA12O43570 354 aa28.17■■■□□ 2.1
LSM4-201ENST00000252816 IREB2P48200 963 aaKnown RBP28.17■■■□□ 2.1
LSM4-201ENST00000252816 RHPN1Q8TCX5 695 aa28.17■■■□□ 2.1
LSM4-201ENST00000252816 ZNF512BQ96KM6 892 aaPredicted RBP28.17■■■□□ 2.1
LSM4-201ENST00000252816 IL1RAPL2Q9NP60 686 aa28.17■■■□□ 2.1
LSM4-201ENST00000252816 AACSQ86V21 672 aa28.16■■■□□ 2.1
LSM4-201ENST00000252816 SLC10A4Q96EP9 437 aa28.16■■■□□ 2.1
LSM4-201ENST00000252816 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.16■■■□□ 2.1
LSM4-201ENST00000252816 FAM198AQ9UFP1 575 aa28.16■■■□□ 2.1
LSM4-201ENST00000252816 AKAP11Q9UKA4 1901 aa28.16■■■□□ 2.1
LSM4-201ENST00000252816 MROH7-TTC4A0A0A0MT08 1334 aa28.16■■■□□ 2.1
LSM4-201ENST00000252816 APBB1O00213 710 aa28.15■■■□□ 2.1
LSM4-201ENST00000252816 TCP10Q12799 353 aa28.15■■■□□ 2.1
LSM4-201ENST00000252816 SLF2Q8IX21 1173 aa28.15■■■□□ 2.1
LSM4-201ENST00000252816 NSUN4Q96CB9 384 aaKnown RBP28.15■■■□□ 2.1
LSM4-201ENST00000252816 RPAP1Q9BWH6 1393 aaPredicted RBP28.14■■■□□ 2.1
LSM4-201ENST00000252816 UNCXA6NJT0 531 aa28.14■■■□□ 2.1
LSM4-201ENST00000252816 CYP2E1P05181 493 aaPredicted RBP28.14■■■□□ 2.1
LSM4-201ENST00000252816 RRP1P56182 461 aaKnown RBP28.14■■■□□ 2.1
LSM4-201ENST00000252816 SPRYD7Q5W111 196 aa28.14■■■□□ 2.1
LSM4-201ENST00000252816 FAM151AQ8WW52 585 aa28.14■■■□□ 2.1
LSM4-201ENST00000252816 RAI14Q9P0K7 980 aa28.14■■■□□ 2.1
LSM4-201ENST00000252816 BTDP43251 543 aa28.13■■■□□ 2.09
LSM4-201ENST00000252816 ZAP70P43403 619 aa28.13■■■□□ 2.09
LSM4-201ENST00000252816 ZFPM1Q8IX07 1006 aa28.13■■■□□ 2.09
LSM4-201ENST00000252816 ANKRD13AQ8IZ07 590 aa28.13■■■□□ 2.09
LSM4-201ENST00000252816 KIF1BPQ96EK5 621 aa28.13■■■□□ 2.09
LSM4-201ENST00000252816 RNF186Q9NXI6 227 aa28.13■■■□□ 2.09
LSM4-201ENST00000252816 LRP2BPQ9P2M1 347 aa28.13■■■□□ 2.09
LSM4-201ENST00000252816 GPR75-ASB3A0A0A6YYF3 556 aa28.12■■■□□ 2.09
LSM4-201ENST00000252816 PPP1R3FQ6ZSY5 799 aaPredicted RBP28.12■■■□□ 2.09
LSM4-201ENST00000252816 REM2Q8IYK8 340 aaPredicted RBP28.12■■■□□ 2.09
LSM4-201ENST00000252816 WNK4Q96J92 1243 aa28.12■■■□□ 2.09
LSM4-201ENST00000252816 RFX7Q2KHR2 1363 aa28.11■■■□□ 2.09
LSM4-201ENST00000252816 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.11■■■□□ 2.092e-8■■■□□ 17.4
LSM4-201ENST00000252816 IDI2Q9BXS1 227 aa28.11■■■□□ 2.09
LSM4-201ENST00000252816 OTOFQ9HC10 1997 aa28.11■■■□□ 2.09
LSM4-201ENST00000252816 RAB11FIP3O75154 756 aa28.1■■■□□ 2.09
LSM4-201ENST00000252816 WDHD1O75717 1129 aaPredicted RBP28.1■■■□□ 2.09
LSM4-201ENST00000252816 TRPA1O75762 1119 aa28.1■■■□□ 2.09
LSM4-201ENST00000252816 GJA5P36382 358 aa28.1■■■□□ 2.09
LSM4-201ENST00000252816 RHBDL3P58872 404 aa28.1■■■□□ 2.09
LSM4-201ENST00000252816 GSTO1P78417 241 aa28.1■■■□□ 2.09
LSM4-201ENST00000252816 TNS4Q8IZW8 715 aa28.1■■■□□ 2.09
LSM4-201ENST00000252816 PIH1D3Q9NQM4 214 aaKnown RBP28.1■■■□□ 2.09
LSM4-201ENST00000252816 SAGE1Q9NXZ1 904 aa28.1■■■□□ 2.09
LSM4-201ENST00000252816 LDHCP07864 332 aa28.09■■■□□ 2.09
LSM4-201ENST00000252816 TM4SF4P48230 202 aa28.09■■■□□ 2.09
LSM4-201ENST00000252816 RGS3P49796 1198 aa28.09■■■□□ 2.09
LSM4-201ENST00000252816 MAP3K9P80192 1104 aa28.09■■■□□ 2.09
LSM4-201ENST00000252816 CLASRPQ8N2M8 674 aaKnown RBP28.09■■■□□ 2.09
LSM4-201ENST00000252816 ELP3Q9H9T3 547 aa28.09■■■□□ 2.09
LSM4-201ENST00000252816 NDUFB9Q9Y6M9 179 aa28.09■■■□□ 2.09
LSM4-201ENST00000252816 VGLL4Q14135 290 aa28.08■■■□□ 2.09
LSM4-201ENST00000252816 MIGA2Q7L4E1 593 aa28.08■■■□□ 2.09
LSM4-201ENST00000252816 HOOK2Q96ED9 719 aa28.08■■■□□ 2.09
LSM4-201ENST00000252816 DDX4Q9NQI0 724 aaKnown RBP28.08■■■□□ 2.09
LSM4-201ENST00000252816 ENTPD3O75355 529 aa28.07■■■□□ 2.08
LSM4-201ENST00000252816 ZBTB48P10074 688 aaPredicted RBP28.07■■■□□ 2.08
LSM4-201ENST00000252816 BCL11AQ9H165 835 aa28.07■■■□□ 2.08
LSM4-201ENST00000252816 NAA16Q6N069 864 aaPredicted RBP28.06■■■□□ 2.08
LSM4-201ENST00000252816 CNKSR2Q8WXI2 1034 aa28.06■■■□□ 2.08
LSM4-201ENST00000252816 WRNIP1Q96S55 665 aa28.06■■■□□ 2.08
LSM4-201ENST00000252816 SREBF2Q12772 1141 aa28.05■■■□□ 2.08
LSM4-201ENST00000252816 IFFO2Q5TF58 517 aa28.05■■■□□ 2.08
LSM4-201ENST00000252816 DCAF15Q66K64 600 aa28.05■■■□□ 2.08
LSM4-201ENST00000252816 SH3BP5LQ7L8J4 393 aa28.05■■■□□ 2.08
LSM4-201ENST00000252816 OPTNQ96CV9 577 aa28.05■■■□□ 2.08
LSM4-201ENST00000252816 MYO5AQ9Y4I1 1855 aaKnown RBP28.04■■■□□ 2.08
LSM4-201ENST00000252816 IFIT2P09913 472 aaKnown RBP28.04■■■□□ 2.08
LSM4-201ENST00000252816 PICALMQ13492 652 aa28.04■■■□□ 2.08
LSM4-201ENST00000252816 ADGRA1Q86SQ6 560 aa28.04■■■□□ 2.08
LSM4-201ENST00000252816 ZNF341Q9BYN7 854 aa28.04■■■□□ 2.08
LSM4-201ENST00000252816 ANTXR1Q9H6X2 564 aa28.04■■■□□ 2.08
LSM4-201ENST00000252816 CSADQ9Y600 493 aa28.04■■■□□ 2.08
LSM4-201ENST00000252816 ATRNL1Q5VV63 1379 aa28.03■■■□□ 2.08
LSM4-201ENST00000252816 MANSC4A6NHS7 340 aaPredicted RBP28.03■■■□□ 2.08
LSM4-201ENST00000252816 ZKSCAN4Q969J2 545 aaPredicted RBP28.03■■■□□ 2.08
LSM4-201ENST00000252816 PCDHB15Q9Y5E8 787 aa28.03■■■□□ 2.08
LSM4-201ENST00000252816 SNCAIPQ9Y6H5 919 aa28.03■■■□□ 2.08
LSM4-201ENST00000252816 MAST2Q6P0Q8 1798 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms