RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 GRIK5Q16478 980 aa12.99□□□□□ -0.33
VPS50-201ENST00000251739 LRRC24Q50LG9 513 aa12.99□□□□□ -0.33
VPS50-201ENST00000251739 CDAN1Q8IWY9 1227 aa12.99□□□□□ -0.33
VPS50-201ENST00000251739 SLC10A4Q96EP9 437 aa12.99□□□□□ -0.33
VPS50-201ENST00000251739 USP44Q9H0E7 712 aa12.99□□□□□ -0.33
VPS50-201ENST00000251739 VEZTQ9HBM0 779 aa12.99□□□□□ -0.33
VPS50-201ENST00000251739 ZNF70Q9UC06 446 aaPredicted RBP12.99□□□□□ -0.33
VPS50-201ENST00000251739 TTF2Q9UNY4 1162 aaKnown RBP12.99□□□□□ -0.33
VPS50-201ENST00000251739 BRCA2P51587 3418 aa12.98□□□□□ -0.33
VPS50-201ENST00000251739 FKTNO75072 461 aa12.98□□□□□ -0.33
VPS50-201ENST00000251739 PDE8BO95263 885 aa12.98□□□□□ -0.33
VPS50-201ENST00000251739 SLFN5Q08AF3 891 aa12.98□□□□□ -0.33
VPS50-201ENST00000251739 TNFAIP1Q13829 316 aa12.98□□□□□ -0.33
VPS50-201ENST00000251739 FBXO46Q6PJ61 603 aaPredicted RBP12.98□□□□□ -0.33
VPS50-201ENST00000251739 DZIP1LQ8IYY4 767 aaKnown RBP12.98□□□□□ -0.33
VPS50-201ENST00000251739 MKI67P46013 3256 aaKnown RBP12.98□□□□□ -0.33
VPS50-201ENST00000251739 TESPA1A2RU30 521 aaPredicted RBP12.97□□□□□ -0.33
VPS50-201ENST00000251739 FGFR2P21802 821 aa12.97□□□□□ -0.33
VPS50-201ENST00000251739 CRKP46108 304 aa12.97□□□□□ -0.33
VPS50-201ENST00000251739 IREB2P48200 963 aaKnown RBP12.97□□□□□ -0.33
VPS50-201ENST00000251739 RFX5P48382 616 aaPredicted RBP12.97□□□□□ -0.33
VPS50-201ENST00000251739 HDLBPQ00341 1268 aaKnown RBP12.97□□□□□ -0.33
VPS50-201ENST00000251739 PLCB2Q00722 1185 aa12.97□□□□□ -0.33
VPS50-201ENST00000251739 ANKRD13AQ8IZ07 590 aa12.97□□□□□ -0.33
VPS50-201ENST00000251739 TDRD3Q9H7E2 651 aaKnown RBP12.97□□□□□ -0.33
VPS50-201ENST00000251739 RBM5P52756 815 aaKnown RBP eCLIP12.96□□□□□ -0.33
VPS50-201ENST00000251739 METTL24Q5JXM2 366 aa12.96□□□□□ -0.33
VPS50-201ENST00000251739 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.96□□□□□ -0.33
VPS50-201ENST00000251739 TRMT2AQ8IZ69 625 aaKnown RBP12.96□□□□□ -0.33
VPS50-201ENST00000251739 KLHDC4Q8TBB5 520 aa12.96□□□□□ -0.33
VPS50-201ENST00000251739 TBC1D22AQ8WUA7 517 aa12.96□□□□□ -0.33
VPS50-201ENST00000251739 IQSEC3Q9UPP2 1182 aaPredicted RBP12.96□□□□□ -0.33
VPS50-201ENST00000251739 RPAP1Q9BWH6 1393 aaPredicted RBP12.95□□□□□ -0.34
VPS50-201ENST00000251739 ALDH1L2Q3SY69 923 aa12.95□□□□□ -0.34
VPS50-201ENST00000251739 PTPN18Q99952 460 aa12.95□□□□□ -0.34
VPS50-201ENST00000251739 MRIQ9BWK5 157 aa12.95□□□□□ -0.34
VPS50-201ENST00000251739 TMEM39BQ9GZU3 492 aa12.95□□□□□ -0.34
VPS50-201ENST00000251739 CEP290O15078 2479 aa12.94□□□□□ -0.34
VPS50-201ENST00000251739 CRHR2Q13324 411 aa12.94□□□□□ -0.34
VPS50-201ENST00000251739 PUM3Q15397 648 aaKnown RBP12.94□□□□□ -0.34
VPS50-201ENST00000251739 FKBP1CQ5VVH2 108 aa12.94□□□□□ -0.34
VPS50-201ENST00000251739 OTOP1Q7RTM1 612 aa12.94□□□□□ -0.34
VPS50-201ENST00000251739 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.94□□□□□ -0.34
VPS50-201ENST00000251739 ZDHHC15Q96MV8 337 aa12.94□□□□□ -0.34
VPS50-201ENST00000251739 SUGT1Q9Y2Z0 365 aa12.94□□□□□ -0.34
VPS50-201ENST00000251739 ZSWIM8A7E2V4 1837 aa12.94□□□□□ -0.34
VPS50-201ENST00000251739 DOCK2Q92608 1830 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 TCP10L2B9ZVM9 353 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 EYA2O00167 538 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 PPP1R37O75864 691 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 BCAMP50895 628 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 CAP1Q01518 475 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 CHAF1AQ13111 956 aaPredicted RBP12.93□□□□□ -0.34
VPS50-201ENST00000251739 VGLL4Q14135 290 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 CAVIN4Q5BKX8 364 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 APOBEC3HQ6NTF7 200 aaKnown RBP12.93□□□□□ -0.34
VPS50-201ENST00000251739 ATG9AQ7Z3C6 839 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 VPS37DQ86XT2 251 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 TEKT1Q969V4 418 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 OPTNQ96CV9 577 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 CDCA7LQ96GN5 454 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 ELP3Q9H9T3 547 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 MYH2Q9UKX2 1941 aa12.93□□□□□ -0.34
VPS50-201ENST00000251739 MAST3O60307 1309 aa12.92□□□□□ -0.34
VPS50-201ENST00000251739 TNNI2P48788 182 aa12.92□□□□□ -0.34
VPS50-201ENST00000251739 HHIPL2Q6UWX4 724 aa12.92□□□□□ -0.34
VPS50-201ENST00000251739 FAM83AQ86UY5 434 aa12.92□□□□□ -0.34
VPS50-201ENST00000251739 BRI3BPQ8WY22 251 aa12.92□□□□□ -0.34
VPS50-201ENST00000251739 AK9Q5TCS8 1911 aa12.92□□□□□ -0.34
VPS50-201ENST00000251739 SPDYE5A6NIY4 337 aa12.91□□□□□ -0.34
VPS50-201ENST00000251739 IFIT1P09914 478 aaKnown RBP12.91□□□□□ -0.34
VPS50-201ENST00000251739 CACNB3P54284 484 aa12.91□□□□□ -0.34
VPS50-201ENST00000251739 MAP3K9P80192 1104 aa12.91□□□□□ -0.34
VPS50-201ENST00000251739 LPIN2Q92539 896 aa12.91□□□□□ -0.34
VPS50-201ENST00000251739 SMC4Q9NTJ3 1288 aa12.91□□□□□ -0.34
VPS50-201ENST00000251739 SNCAIPQ9Y6H5 919 aa12.91□□□□□ -0.34
VPS50-201ENST00000251739 PTPRFP10586 1907 aa12.91□□□□□ -0.34
VPS50-201ENST00000251739 CIAO1O76071 339 aa12.9□□□□□ -0.34
VPS50-201ENST00000251739 CT47B1P0C2W7 299 aaPredicted RBP12.9□□□□□ -0.34
VPS50-201ENST00000251739 PRPF38BQ5VTL8 546 aaKnown RBP12.9□□□□□ -0.34
VPS50-201ENST00000251739 OTUD7BQ6GQQ9 843 aa12.9□□□□□ -0.34
VPS50-201ENST00000251739 CD99L2Q8TCZ2 262 aa12.9□□□□□ -0.34
VPS50-201ENST00000251739 ERO1AQ96HE7 468 aa12.9□□□□□ -0.34
VPS50-201ENST00000251739 TRIM17Q9Y577 477 aa12.9□□□□□ -0.34
VPS50-201ENST00000251739 CCL15-CCL14A0A0B4J2E2 113 aa12.89□□□□□ -0.35
VPS50-201ENST00000251739 FRAT2O75474 233 aaPredicted RBP12.89□□□□□ -0.35
VPS50-201ENST00000251739 SLC5A1P13866 664 aa12.89□□□□□ -0.35
VPS50-201ENST00000251739 CCL15Q16663 113 aa12.89□□□□□ -0.35
VPS50-201ENST00000251739 WDR66Q8TBY9 1149 aa12.89□□□□□ -0.35
VPS50-201ENST00000251739 ARMC5Q96C12 935 aa12.89□□□□□ -0.35
VPS50-201ENST00000251739 PTPN22Q9Y2R2 807 aa12.89□□□□□ -0.35
VPS50-201ENST00000251739 RFX7Q2KHR2 1363 aa12.89□□□□□ -0.35
VPS50-201ENST00000251739 SALL1Q9NSC2 1324 aa12.88□□□□□ -0.35
VPS50-201ENST00000251739 UBTFL1P0CB47 393 aaPredicted RBP12.88□□□□□ -0.35
VPS50-201ENST00000251739 GTF2A2P52657 109 aa12.88□□□□□ -0.35
VPS50-201ENST00000251739 SP3Q02447 781 aa12.88□□□□□ -0.35
VPS50-201ENST00000251739 ATP2B3Q16720 1220 aa12.88□□□□□ -0.35
VPS50-201ENST00000251739 FAM43AQ8N2R8 423 aa12.88□□□□□ -0.35
VPS50-201ENST00000251739 OTUD5Q96G74 571 aa12.88□□□□□ -0.35
VPS50-201ENST00000251739 TMOD2Q9NZR1 351 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms