RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 NCMAPQ5T1S8 102 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 SPATA31B1PQ5VZV4 182 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 ZNF497Q6ZNH5 498 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 MSRB3Q8IXL7 192 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 Q8NFD4 153 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 TANC2Q9HCD6 1990 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 FXYD1O00168 92 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 SYNJ2BPP57105 145 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 NANOS3P60323 173 aaKnown RBP5.07□□□□□ -1.6
SCN1A-217ENST00000637988 FOXF2Q12947 444 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 LINC01559Q495D7 138 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 PRO1933Q9H354 126 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 ITGB1BP1O14713 200 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 ZCCHC24Q8N2G6 241 aaKnown RBP5.07□□□□□ -1.6
SCN1A-217ENST00000637988 CTHRC1Q96CG8 243 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 COQ2Q96H96 371 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 CHTOPQ9Y3Y2 248 aaKnown RBP5.07□□□□□ -1.6
SCN1A-217ENST00000637988 IGLV3-12A0A075B6K2 115 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 C5orf64Q2M2E5 130 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 DEFB113Q30KQ7 82 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 Q6ZS92 163 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 ZNF329Q86UD4 541 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 NHP2Q9NX24 153 aaKnown RBP5.07□□□□□ -1.6
SCN1A-217ENST00000637988 KLF2Q9Y5W3 355 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-217ENST00000637988 LAGE3Q14657 143 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 NABP1Q96AH0 204 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 SRSF8Q9BRL6 282 aaKnown RBP5.07□□□□□ -1.6
SCN1A-217ENST00000637988 GRIFINA4D1Z8 144 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 MPTX1A8MV57 137 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 H3BMM0 161 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 CGAP01215 116 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 NBL1P41271 181 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 Q6ZNX1 250 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 MAPK1IP1LQ8NDC0 245 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 UBE2WQ96B02 151 aa5.07□□□□□ -1.6
SCN1A-217ENST00000637988 TRBV5-5A0A0J9YX44 114 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 SELLP14151 372 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 UBE2E1P51965 193 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 SNRPEP62304 92 aaKnown RBP5.06□□□□□ -1.6
SCN1A-217ENST00000637988 STPG2Q8N412 459 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 ORAOV1Q8WV07 137 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 RCC1LQ96I51 464 aaKnown RBP5.06□□□□□ -1.6
SCN1A-217ENST00000637988 IGHV1-69DA0A0B4J2H0 117 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 PGPEP1LA6NFU8 196 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 IGHV1-69P01742 117 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 CBLN1P23435 193 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 ATRXP46100 2492 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 ATXN8Q156A1 80 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 ARHGAP21Q5T5U3 1957 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 MED12LQ86YW9 2145 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 C1orf100Q5SVJ3 147 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 SLC25A48Q6ZT89 311 aaKnown RBP5.06□□□□□ -1.6
SCN1A-217ENST00000637988 ZNF138P52744 262 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 GTF3AQ92664 365 aaKnown RBP5.06□□□□□ -1.6
SCN1A-217ENST00000637988 IFT22Q9H7X7 185 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 TRAV2A0A0B4J234 112 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 C7orf77A4D0Y5 90 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 CD200R1LQ6Q8B3 271 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 PAQR4Q8N4S7 273 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-217ENST00000637988 CENPVL1A0A0U1RR11 272 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 A0A1B0GWB2 263 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 HIGD1CA8MV81 97 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 RHODO00212 210 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 VCYO14598 125 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 NDUFS5O43920 106 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 DPM2O94777 84 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 AZU1P20160 251 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 ZNF876PQ49A33 203 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 C1orf159Q96HA4 380 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 TM2D1Q9BX74 207 aa5.06□□□□□ -1.6
SCN1A-217ENST00000637988 SH2D6Q7Z4S9 175 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 TM2D2Q9BX73 214 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 ZNF98A6NK75 572 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 HEPN1Q6WQI6 88 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 OBSL1O75147 1896 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 MUC21A0A0G2JKD1 596 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 MUC21A0A140T8X8 626 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 C17orf98A8MV24 154 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 INAFM2P0DMQ5 153 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 OTX1P32242 354 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-217ENST00000637988 RND3P61587 244 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 PLEKHB2Q96CS7 222 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 MRPS18AQ9NVS2 196 aaKnown RBP5.05□□□□□ -1.6
SCN1A-217ENST00000637988 RPL15P61313 204 aaKnown RBP5.05□□□□□ -1.6
SCN1A-217ENST00000637988 GPHA2Q96T91 129 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 IGKV2D-24A0A075B6R9 120 aa5.05□□□□□ -1.6
SCN1A-217ENST00000637988 DEFB131AP59861 70 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 C1orf122Q6ZSJ8 110 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 IL17RELQ6ZVW7 336 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 RHPN1-AS1Q9BWJ2 59 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 TRAV5A0A0B4J249 113 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 IGHV2-70DA0A0C4DH43 119 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 CD5LO43866 347 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 MLNRO43193 412 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 LINC00271P0C7V0 271 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 CACNA1HO95180 2353 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 SPNP16150 400 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 CCL1P22362 96 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 PLA2G5P39877 138 aa5.04□□□□□ -1.6
SCN1A-217ENST00000637988 NDPQ00604 133 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms