RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 C5orf51A6NDU8 294 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 L7N2F9 121 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 CCSO14618 274 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 SPP1P10451 314 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 GATA2P23769 480 aaPredicted RBP8.51□□□□□ -1.05
CLN3-257ENST00000637110 S100A7P31151 101 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 ID1P41134 155 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 RRAS2P62070 204 aaPredicted RBP8.51□□□□□ -1.05
CLN3-257ENST00000637110 VAMP2P63027 116 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 MZT2BQ6NZ67 158 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 TRPT1Q86TN4 253 aaKnown RBP8.51□□□□□ -1.05
CLN3-257ENST00000637110 RPP25LQ8N5L8 163 aaKnown RBP8.51□□□□□ -1.05
CLN3-257ENST00000637110 OR1B1Q8NGR6 318 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 SMIM8Q96KF7 97 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 TMEM147Q9BVK8 224 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 SLC25A22Q9H936 323 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 NUDT15Q9NV35 164 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 MGAT4CQ9UBM8 478 aa8.51□□□□□ -1.05
CLN3-257ENST00000637110 IGKV1OR2-108A0A075B7D4 117 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 NUPR2A6NF83 97 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 DEFB4AO15263 64 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 IL5P05113 134 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 H2AFB2P0C5Z0 115 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 METTL15P1P0C7V9 234 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 BCAP31P51572 246 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 EWSR1Q01844 656 aaKnown RBP eCLIP8.5□□□□□ -1.05
CLN3-257ENST00000637110 C1orf194Q5T5A4 169 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 OR10P1Q8NGE3 313 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 ZNF431Q8TF32 576 aaPredicted RBP8.5□□□□□ -1.05
CLN3-257ENST00000637110 MUC4Q99102 2169 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 SEC22CQ9BRL7 303 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 DOK5Q9P104 306 aa8.5□□□□□ -1.05
CLN3-257ENST00000637110 RCL1Q9Y2P8 373 aaKnown RBP8.5□□□□□ -1.05
CLN3-257ENST00000637110 LSM5Q9Y4Y9 91 aaKnown RBP8.5□□□□□ -1.05
CLN3-257ENST00000637110 AGRNO00468 2067 aa8.49□□□□□ -1.05
CLN3-257ENST00000637110 PRSS46E5RG02 174 aa8.49□□□□□ -1.05
CLN3-257ENST00000637110 IGKV3-20P01619 116 aa8.49□□□□□ -1.05
CLN3-257ENST00000637110 GALR1P47211 349 aa8.49□□□□□ -1.05
CLN3-257ENST00000637110 NUTF2P61970 127 aaKnown RBP8.49□□□□□ -1.05
CLN3-257ENST00000637110 TMEM41BQ5BJD5 291 aa8.49□□□□□ -1.05
CLN3-257ENST00000637110 GSG1LQ6UXU4 331 aa8.49□□□□□ -1.05
CLN3-257ENST00000637110 CYP2G1PQ6ZSU1 146 aa8.49□□□□□ -1.05
CLN3-257ENST00000637110 TMEM144Q7Z5S9 345 aa8.49□□□□□ -1.05
CLN3-257ENST00000637110 C12orf45Q8N5I9 185 aaPredicted RBP8.49□□□□□ -1.05
CLN3-257ENST00000637110 C11orf45Q8TAV5 145 aa8.49□□□□□ -1.05
CLN3-257ENST00000637110 CLEC5AQ9NY25 188 aa8.49□□□□□ -1.05
CLN3-257ENST00000637110 TSC22D2O75157 780 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 CCNKO75909 580 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 MBPP02686 304 aaPredicted RBP8.48□□□□□ -1.05
CLN3-257ENST00000637110 OR5G3P0C626 314 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 TAS2R30P59541 319 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 RAP2BP61225 183 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 DLK1P80370 383 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 FGL1Q08830 312 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 TMEM182Q6ZP80 229 aaPredicted RBP8.48□□□□□ -1.05
CLN3-257ENST00000637110 LINC00299Q6ZSB3 139 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 ENKURQ8TC29 256 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 C16orf92Q96LL3 132 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 RSG1Q9BU20 258 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 WDR12Q9GZL7 423 aaKnown RBP8.48□□□□□ -1.05
CLN3-257ENST00000637110 NPVFQ9HCQ7 196 aa8.48□□□□□ -1.05
CLN3-257ENST00000637110 SEPSECSQ9HD40 501 aaKnown RBP8.48□□□□□ -1.05
CLN3-257ENST00000637110 KLK5Q9Y337 293 aaPredicted RBP8.48□□□□□ -1.05
CLN3-257ENST00000637110 ZNF98A6NK75 572 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 HYPMO75409 117 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 C4BPBP20851 252 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 PSMB3P49720 205 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 CAV2P51636 162 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 PAX9P55771 341 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 FXYD7P58549 80 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 NANOS2P60321 138 aaKnown RBP8.47□□□□□ -1.05
CLN3-257ENST00000637110 S100A10P60903 97 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 EBLN2Q6P2I7 272 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 CEMP1Q6PRD7 247 aaPredicted RBP8.47□□□□□ -1.05
CLN3-257ENST00000637110 TMEM14EPQ6UXP3 125 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 OR4B1Q8NGF8 309 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 C1QTNF4Q9BXJ3 329 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 MFFQ9GZY8 342 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 SLC25A32Q9H2D1 315 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 XCL2Q9UBD3 114 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 SLC45A2Q9UMX9 530 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 HIGD1AQ9Y241 93 aa8.47□□□□□ -1.05
CLN3-257ENST00000637110 C7orf66A4D0T2 115 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 A6NHS1 94 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 PMS2P5A8MQ11 134 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 H3BMM0 161 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 GOSR2O14653 212 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 LINC00869P0C866 280 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 MED14OSP0DP75 135 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 ATF4P18848 351 aaPredicted RBP8.46□□□□□ -1.06
CLN3-257ENST00000637110 PVALBP20472 110 aaPredicted RBP8.46□□□□□ -1.06
CLN3-257ENST00000637110 MEOX2P50222 304 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 DEFB1P60022 68 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 SELENOTP62341 195 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 ASAH1Q13510 395 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 SAMD13Q5VXD3 122 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 TEPPQ6URK8 271 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 S100A7AQ86SG5 101 aa8.46□□□□□ -1.06
CLN3-257ENST00000637110 PHLDA1Q8WV24 401 aaPredicted RBP8.46□□□□□ -1.06
CLN3-257ENST00000637110 C2orf50Q96LR7 162 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms