RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ZNF835Q9Y2P0 537 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 PPIAL4AQ9Y536 164 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 MYO18BQ8IUG5 2567 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 A0A1W2PS18 150 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 FAM231BA6NCW3 169 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 J3QL48 77 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 ORM2P19652 201 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 UQCRFS1P47985 274 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 LINC00205P59089 165 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 KLF5Q13887 457 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-214ENST00000637038 C5orf64Q2M2E5 130 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 KIAA1644Q3SXP7 199 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 Q6AWC8 147 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 FAM53AQ6NSI3 398 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-214ENST00000637038 ORAOV1Q8WV07 137 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 GLMPQ8WWB7 406 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 NPIPB3Q92617 1050 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 DPF1Q92782 380 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 TRGV9Q99603 122 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 GFRA4Q9GZZ7 299 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 ST20Q9HBF5 79 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 NDUFA4L2Q9NRX3 87 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 FBXL7Q9UJT9 491 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 EPDR1Q9UM22 224 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 TNFRSF18Q9Y5U5 241 aa3.23□□□□□ -1.89
SCN1A-214ENST00000637038 PGPA6NDG6 321 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 CYSRT1A8MQ03 144 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 GGTLC3B5MD39 225 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 BMPR1BO00238 502 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 C3orf79P0CE67 100 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 CGB3P0DN86 165 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 CGB7P0DN87 165 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 CSN1S1P47710 185 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 CAMPP49913 170 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF134P52741 427 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 SLC35B1P78383 322 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 FBLN7Q53RD9 439 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 Q56UQ5 140 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 TEX36Q5VZQ5 186 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 LINC00311Q8N616 119 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 TEX45Q8NA69 505 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 THAP8Q8NA92 274 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 H0YJW9 148 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 C16orf97H3BN30 126 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 OR2J3O76001 311 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 IGHV1-46P01743 117 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 CD40P25942 277 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 COL8A1P27658 744 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 HTR1DP28221 377 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 RBPMS2Q6ZRY4 209 aaKnown RBP3.22□□□□□ -1.89
SCN1A-214ENST00000637038 FA2HQ7L5A8 372 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 LINC00305Q7Z4B0 112 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF329Q86UD4 541 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 WFDC8Q8IUA0 241 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 FAM216BQ8N7L0 139 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 BLNKQ8WV28 456 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 IGF2BP2-AS1Q96M15 143 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 CCL19Q99731 98 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 OTORQ9NRC9 128 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 AKAP9Q99996 3911 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.22□□□□□ -1.89
SCN1A-214ENST00000637038 A0A1W2PNU3 283 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-214ENST00000637038 A6NNC1 897 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 HIGD1CA8MV81 97 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 PROP1O75360 226 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 LEPROTL1O95214 131 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 IGLC2P0DOY2 106 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 IGLC3P0DOY3 106 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 CDKN1AP38936 164 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 PSMG4Q5JS54 123 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 LEMD1Q68G75 181 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 OR4C5Q8NGB2 326 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 OR5AN1Q8NGI8 311 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 FAM57AQ8TBR7 257 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 C18orf32Q8TCD1 76 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 SLC25A2Q9BXI2 301 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 HCFC1P51610 2035 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF407Q9C0G0 2248 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 FBLL1A6NHQ2 334 aaKnown RBP3.22□□□□□ -1.89
SCN1A-214ENST00000637038 NUPR1O60356 82 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 TOMM40O96008 361 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 VAMP3Q15836 100 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 TNXAQ16473 311 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 SLC25A34Q6PIV7 304 aa3.22□□□□□ -1.89
SCN1A-214ENST00000637038 ZCCHC24Q8N2G6 241 aaKnown RBP3.22□□□□□ -1.89
SCN1A-214ENST00000637038 SSBP3Q9BWW4 388 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-214ENST00000637038 MAST4O15021 2626 aa3.21□□□□□ -1.89
SCN1A-214ENST00000637038 HRNRQ86YZ3 2850 aaPredicted RBP3.21□□□□□ -1.89
SCN1A-214ENST00000637038 TRAV34A0A0B4J273 112 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 IGHV1-69-2A0A0G2JMI3 117 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 C17orf100A8MU93 164 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 CLEC3BP05452 202 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 GATA2P23769 480 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-214ENST00000637038 MMDQ15546 238 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 NUP35Q8NFH5 326 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 OR2T6Q8NHC8 308 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 RASL11BQ9BPW5 248 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 SRSF8Q9BRL6 282 aaKnown RBP3.21□□□□□ -1.9
SCN1A-214ENST00000637038 MS4A6AQ9H2W1 248 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 AAMDCQ9H7C9 122 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms