RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 GNG4P50150 75 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 GBGT1Q8N5D6 347 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 BLNKQ8WV28 456 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 PIMREGQ9BSJ6 248 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 EREGO14944 169 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 PLP1P60201 277 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 KCNIP4Q6PIL6 250 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 Q8N9W7 124 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 OR10G8Q8NGN5 311 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 LINC00479Q96M42 142 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 FANCD2OSQ96PS1 177 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 IGHV3OR16-10A0A075B7F0 116 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 CENPVL3A0A0U1RRI6 287 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 NPFFO15130 113 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 ATP5J2P56134 94 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 RANP62826 216 aaKnown RBP12.34□□□□□ -0.43
CLN3-251ENST00000636853 ZNF329Q86UD4 541 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 SGMS2Q8NHU3 365 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 SNHG12Q9BXW3 62 aa12.34□□□□□ -0.43
CLN3-251ENST00000636853 ZFYVE26Q68DK2 2539 aa12.33□□□□□ -0.44
CLN3-251ENST00000636853 NPIPB5A8MRT5 1133 aa12.33□□□□□ -0.44
CLN3-251ENST00000636853 SLC17A3O00476 420 aa12.33□□□□□ -0.44
CLN3-251ENST00000636853 OR1L6Q8NGR2 347 aa12.33□□□□□ -0.44
CLN3-251ENST00000636853 C10orf105Q8TEF2 133 aa12.33□□□□□ -0.44
CLN3-251ENST00000636853 HIGD1AQ9Y241 93 aa12.33□□□□□ -0.44
CLN3-251ENST00000636853 LY96Q9Y6Y9 160 aa12.33□□□□□ -0.44
CLN3-251ENST00000636853 SPG11Q96JI7 2443 aa12.33□□□□□ -0.44
CLN3-251ENST00000636853 IGLV11-55A0A075B6I3 123 aa12.32□□□□□ -0.44
CLN3-251ENST00000636853 IGHV7-81A0A0B4J1V7 117 aa12.32□□□□□ -0.44
CLN3-251ENST00000636853 H3BTX0 84 aa12.32□□□□□ -0.44
CLN3-251ENST00000636853 GOSR1O95249 250 aa12.32□□□□□ -0.44
CLN3-251ENST00000636853 CNN1P51911 297 aaKnown RBP12.32□□□□□ -0.44
CLN3-251ENST00000636853 NRGNQ92686 78 aa12.32□□□□□ -0.44
CLN3-251ENST00000636853 CRYBG3Q68DQ2 2970 aa12.32□□□□□ -0.44
CLN3-251ENST00000636853 EGR2P11161 476 aaPredicted RBP12.32□□□□□ -0.44
CLN3-251ENST00000636853 BRS3P32247 399 aa12.32□□□□□ -0.44
CLN3-251ENST00000636853 TTC9CQ8N5M4 171 aa12.32□□□□□ -0.44
CLN3-251ENST00000636853 STXBP6Q8NFX7 210 aa12.32□□□□□ -0.44
CLN3-251ENST00000636853 HSPB9Q9BQS6 159 aa12.32□□□□□ -0.44
CLN3-251ENST00000636853 POLR3KQ9Y2Y1 108 aaPredicted RBP12.32□□□□□ -0.44
CLN3-251ENST00000636853 UTP20O75691 2785 aaKnown RBP12.31□□□□□ -0.44
CLN3-251ENST00000636853 IGHV4-30-2A0A087WSY4 118 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 NBEAP1P0C6P0 100 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 GP9P14770 177 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 PAX8Q06710 450 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 GAGE1Q13065 139 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 CLEC2AQ6UVW9 174 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 C1RLQ9NZP8 487 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 CELSR1Q9NYQ6 3014 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 TRAV34A0A0B4J273 112 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 GNG5P63218 68 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 FOXL1Q12952 345 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 NHLRC2Q8NBF2 726 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 IGF2BP2-AS1Q96M15 143 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 SPOCK3Q9BQ16 436 aa12.31□□□□□ -0.44
CLN3-251ENST00000636853 SLC25A39Q9BZJ4 359 aaPredicted RBP12.31□□□□□ -0.44
CLN3-251ENST00000636853 ZNF320A2RRD8 509 aa12.3□□□□□ -0.44
CLN3-251ENST00000636853 IGLV2-8P01709 118 aa12.3□□□□□ -0.44
CLN3-251ENST00000636853 IGHV3-23P01764 117 aa12.3□□□□□ -0.44
CLN3-251ENST00000636853 RPL15P61313 204 aaKnown RBP12.3□□□□□ -0.44
CLN3-251ENST00000636853 RNASE7Q9H1E1 156 aaKnown RBP12.3□□□□□ -0.44
CLN3-251ENST00000636853 PGPA6NDG6 321 aa12.3□□□□□ -0.44
CLN3-251ENST00000636853 SH2D7A6NKC9 451 aaPredicted RBP12.3□□□□□ -0.44
CLN3-251ENST00000636853 VWC2LB2RUY7 222 aa12.3□□□□□ -0.44
CLN3-251ENST00000636853 PEX7O00628 323 aa12.3□□□□□ -0.44
CLN3-251ENST00000636853 MGST1P10620 155 aaKnown RBP12.3□□□□□ -0.44
CLN3-251ENST00000636853 MYCNOSP40205 109 aa12.3□□□□□ -0.44
CLN3-251ENST00000636853 MRPL27Q9P0M9 148 aaKnown RBP12.3□□□□□ -0.44
CLN3-251ENST00000636853 MYO18BQ8IUG5 2567 aa12.3□□□□□ -0.44
CLN3-251ENST00000636853 GNG7O60262 68 aa12.29□□□□□ -0.44
CLN3-251ENST00000636853 OR2J3O76001 311 aa12.29□□□□□ -0.44
CLN3-251ENST00000636853 NDUFB8O95169 186 aa12.29□□□□□ -0.44
CLN3-251ENST00000636853 BRD3OSQ6XYD6 125 aa12.29□□□□□ -0.44
CLN3-251ENST00000636853 NAGKQ9UJ70 344 aa12.29□□□□□ -0.44
CLN3-251ENST00000636853 F8W735 103 aaPredicted RBP12.28□□□□□ -0.44
CLN3-251ENST00000636853 NDUFS8O00217 210 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 HLA-DRB1P01911 266 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 SLC25A5P05141 298 aaKnown RBP12.28□□□□□ -0.44
CLN3-251ENST00000636853 MFAP4P55083 255 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 ZNF491Q8N8L2 437 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 IL36BQ9NZH7 164 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 CDC42EP3Q9UKI2 254 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 RPH3ALQ9UNE2 315 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 V9GYV3 84 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 TRAV40A0A0B4J280 105 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 TOMM40O96008 361 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 IL4P05112 153 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 Q56UQ5 140 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 ZNF843Q8N446 348 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 SGK494Q96LW2 274 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 C20orf144Q9BQM9 153 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 CSMD2Q7Z408 3487 aa12.28□□□□□ -0.44
CLN3-251ENST00000636853 ISLRO14498 428 aa12.27□□□□□ -0.44
CLN3-251ENST00000636853 ECSCRQ19T08 205 aa12.27□□□□□ -0.44
CLN3-251ENST00000636853 BCL6BQ8N143 479 aaPredicted RBP12.27□□□□□ -0.44
CLN3-251ENST00000636853 RNF125Q96EQ8 232 aa12.27□□□□□ -0.44
CLN3-251ENST00000636853 TMUB1Q9BVT8 246 aa12.27□□□□□ -0.44
CLN3-251ENST00000636853 C21orf62Q9NYP8 219 aa12.27□□□□□ -0.44
CLN3-251ENST00000636853 EPDR1Q9UM22 224 aa12.27□□□□□ -0.44
CLN3-251ENST00000636853 ZNF462Q96JM2 2506 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms