RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 VWC2Q2TAL6 325 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 RNASE6Q93091 150 aaKnown RBP5.05□□□□□ -1.6
SCN1A-212ENST00000636194 TMEFF2Q9UIK5 374 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-212ENST00000636194 MSGN1A6NI15 193 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 D6R8Y8 96 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 SLC25A48Q6ZT89 311 aaKnown RBP5.05□□□□□ -1.6
SCN1A-212ENST00000636194 RNF125Q96EQ8 232 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 MESP1Q9BRJ9 268 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 FOXA3P55318 350 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-212ENST00000636194 LINC00477Q96M19 166 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 A0A1B0GTI1 187 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 LINC01551Q86U37 167 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 MUC21A0A0G2JKD1 596 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 MUC21A0A140T8X8 626 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 SRSF2Q01130 221 aaKnown RBP5.04□□□□□ -1.6
SCN1A-212ENST00000636194 VSIRQ9H7M9 311 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 ACYP1P07311 99 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 C2orf68Q2NKX9 166 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 ACP7Q6ZNF0 438 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 SPRED2Q7Z698 418 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 STPG4Q8N801 248 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 IGHV3-73A0A0B4J1V6 119 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 KLK8O60259 260 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 CTGFP29279 349 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 KLHL30-AS1Q8NEE0 82 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 LAMTOR2Q9Y2Q5 125 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 U3KQE9 123 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 MRPL14Q6P1L8 145 aaKnown RBP5.04□□□□□ -1.6
SCN1A-212ENST00000636194 NEUROG3Q9Y4Z2 214 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 PGLYRP1O75594 196 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-212ENST00000636194 ZIC1Q15915 447 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 UCN2Q96RP3 112 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 PDFQ9HBH1 243 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 TRBV5-4A0A0C4DH59 114 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 DANCRP0C864 163 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 HMGA1P17096 107 aaKnown RBP5.04□□□□□ -1.6
SCN1A-212ENST00000636194 SIPA1L3O60292 1781 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-212ENST00000636194 KIAA1671Q9BY89 1806 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 FAM223BA6NKX1 122 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 SHISA9B4DS77 424 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 TAX1BP3O14907 124 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 GATA3P23771 443 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 Q6ZNB5 142 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 TRPT1Q86TN4 253 aaKnown RBP5.04□□□□□ -1.6
SCN1A-212ENST00000636194 FAM223AQ8IWN6 122 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 ZNF503Q96F45 646 aa5.04□□□□□ -1.6
SCN1A-212ENST00000636194 SCTP09683 121 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 MDKP21741 143 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-212ENST00000636194 HERV-K104P63124 156 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 ZIC3O60481 467 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 IGLV3-27P01718 113 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 TSKUQ8WUA8 353 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 TNRC6CQ9HCJ0 1690 aaKnown RBP5.03□□□□□ -1.6
SCN1A-212ENST00000636194 C9JAW5 83 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 F6UB75 175 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 RS1O15537 224 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 NGFRP08138 427 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 FOXG1P55316 489 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-212ENST00000636194 CFHR1Q03591 330 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 ACTL10Q5JWF8 245 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 SH2D6Q7Z4S9 175 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 COX14Q96I36 57 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 IGHV3-11P01762 117 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 C1QAP02745 245 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 RUNX1Q01196 453 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 ZP4Q12836 540 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 PDE6HQ13956 83 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 C1orf220Q5T0J3 134 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 ZNF664Q8N3J9 261 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 TMEM170AQ8WVE7 144 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 SERP1Q9Y6X1 66 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 CTSBP07858 339 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 OR9G9P0C7N8 305 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 ZNF876PQ49A33 203 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 TPRX1Q8N7U7 411 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 ZNF831Q5JPB2 1677 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 IGHV1-45A0A0A0MS14 117 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 SRP19P09132 144 aaKnown RBP5.03□□□□□ -1.6
SCN1A-212ENST00000636194 CD200R1LQ6Q8B3 271 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 IL17DQ8TAD2 202 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 PLPPR1Q8TBJ4 325 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 KNCNA6PVL3 124 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 CDC42EP2O14613 210 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 C1QL3Q5VWW1 255 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 WDYHV1Q96HA8 205 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 NDUFA12Q9UI09 145 aa5.03□□□□□ -1.6
SCN1A-212ENST00000636194 NYNRINQ9P2P1 1898 aaKnown RBP5.02□□□□□ -1.61
SCN1A-212ENST00000636194 USP17L23D6RBM5 183 aa5.02□□□□□ -1.61
SCN1A-212ENST00000636194 JMJD7-PLA2G4BH0Y9G9 81 aa5.02□□□□□ -1.61
SCN1A-212ENST00000636194 ZG16O60844 167 aa5.02□□□□□ -1.61
SCN1A-212ENST00000636194 PSG4Q00888 419 aa5.02□□□□□ -1.61
SCN1A-212ENST00000636194 MAVSQ7Z434 540 aa5.02□□□□□ -1.61
SCN1A-212ENST00000636194 C11orf44Q8N8P7 122 aa5.02□□□□□ -1.61
SCN1A-212ENST00000636194 RCC1LQ96I51 464 aaKnown RBP5.02□□□□□ -1.61
SCN1A-212ENST00000636194 IMMP1LQ96LU5 166 aa5.02□□□□□ -1.61
SCN1A-212ENST00000636194 SLC25A39Q9BZJ4 359 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-212ENST00000636194 DEFB130BP0DP73 79 aa5.02□□□□□ -1.61
SCN1A-212ENST00000636194 DEFB130AP0DP74 79 aa5.02□□□□□ -1.61
SCN1A-212ENST00000636194 BVES-AS1Q5T3Y7 98 aa5.02□□□□□ -1.61
SCN1A-212ENST00000636194 WFDC5Q8TCV5 224 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms