RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 GBGT1Q8N5D6 347 aa13.56□□□□□ -0.24
CLN3-239ENST00000628023 DOK5Q9P104 306 aa13.56□□□□□ -0.24
CLN3-239ENST00000628023 U3KQE9 123 aa13.56□□□□□ -0.24
CLN3-239ENST00000628023 HELTA6NFD8 242 aa13.55□□□□□ -0.24
CLN3-239ENST00000628023 AGPAT2O15120 278 aa13.55□□□□□ -0.24
CLN3-239ENST00000628023 FGF7P21781 194 aa13.55□□□□□ -0.24
CLN3-239ENST00000628023 RPL12P30050 165 aaKnown RBP13.55□□□□□ -0.24
CLN3-239ENST00000628023 CAMLGP49069 296 aa13.55□□□□□ -0.24
CLN3-239ENST00000628023 VWC2Q2TAL6 325 aa13.55□□□□□ -0.24
CLN3-239ENST00000628023 C16orf54Q6UWD8 224 aa13.55□□□□□ -0.24
CLN3-239ENST00000628023 TMEM182Q6ZP80 229 aaPredicted RBP13.55□□□□□ -0.24
CLN3-239ENST00000628023 MGST2Q99735 147 aa13.55□□□□□ -0.24
CLN3-239ENST00000628023 FAM90A2PQ658T7 463 aa13.54□□□□□ -0.24
CLN3-239ENST00000628023 WFDC3Q8IUB2 231 aa13.54□□□□□ -0.24
CLN3-239ENST00000628023 Q8N1Y9 231 aa13.54□□□□□ -0.24
CLN3-239ENST00000628023 STXBP6Q8NFX7 210 aa13.54□□□□□ -0.24
CLN3-239ENST00000628023 TUBA4BQ9H853 241 aa13.54□□□□□ -0.24
CLN3-239ENST00000628023 WDR83OSQ9Y284 106 aa13.54□□□□□ -0.24
CLN3-239ENST00000628023 HSPB11Q9Y547 144 aa13.54□□□□□ -0.24
CLN3-239ENST00000628023 BUB3O43684 328 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 HYPMO75409 117 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 OR5G3P0C626 314 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 IGHV4-30-4P0DP06 118 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 LYL1P12980 280 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 SIGLEC15Q6ZMC9 328 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 GLMPQ8WWB7 406 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 ASCL2Q99929 193 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 ARL6Q9H0F7 186 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 MS4A6AQ9H2W1 248 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 UBQLN2Q9UHD9 624 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 SLC45A2Q9UMX9 530 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 HIGD1AQ9Y241 93 aa13.53□□□□□ -0.24
CLN3-239ENST00000628023 OR11H12B2RN74 326 aa13.52□□□□□ -0.25
CLN3-239ENST00000628023 AP2S1P53680 142 aaPredicted RBP13.52□□□□□ -0.25
CLN3-239ENST00000628023 S100A7AQ86SG5 101 aa13.52□□□□□ -0.25
CLN3-239ENST00000628023 OR2T35Q8NGX2 323 aa13.52□□□□□ -0.25
CLN3-239ENST00000628023 ATP5SQ99766 215 aa13.52□□□□□ -0.25
CLN3-239ENST00000628023 GGTLC1Q9BX51 225 aa13.52□□□□□ -0.25
CLN3-239ENST00000628023 SMIM3Q9BZL3 60 aa13.52□□□□□ -0.25
CLN3-239ENST00000628023 WFDC10AQ9H1F0 79 aa13.52□□□□□ -0.25
CLN3-239ENST00000628023 SLC25A22Q9H936 323 aa13.52□□□□□ -0.25
CLN3-239ENST00000628023 FBXL17Q9UF56 701 aa13.52□□□□□ -0.25
CLN3-239ENST00000628023 COX7A2P2O60397 106 aa13.51□□□□□ -0.25
CLN3-239ENST00000628023 MPDU1O75352 247 aa13.51□□□□□ -0.25
CLN3-239ENST00000628023 PXDC1Q5TGL8 231 aa13.51□□□□□ -0.25
CLN3-239ENST00000628023 OR8I2Q8N0Y5 310 aa13.51□□□□□ -0.25
CLN3-239ENST00000628023 DEFB125Q8N687 156 aa13.51□□□□□ -0.25
CLN3-239ENST00000628023 STPG3Q8N7X2 389 aa13.51□□□□□ -0.25
CLN3-239ENST00000628023 FXYD6-FXYD2A0A087WZ82 144 aa13.5□□□□□ -0.25
CLN3-239ENST00000628023 FRMD6-AS1P0C7T7 363 aa13.5□□□□□ -0.25
CLN3-239ENST00000628023 OPCMLQ14982 345 aa13.5□□□□□ -0.25
CLN3-239ENST00000628023 C1orf194Q5T5A4 169 aa13.5□□□□□ -0.25
CLN3-239ENST00000628023 MIC13Q5XKP0 118 aa13.5□□□□□ -0.25
CLN3-239ENST00000628023 Q6ZRG5 221 aa13.5□□□□□ -0.25
CLN3-239ENST00000628023 SLC25A39Q9BZJ4 359 aaPredicted RBP13.5□□□□□ -0.25
CLN3-239ENST00000628023 SRD5A3Q9H8P0 318 aa13.5□□□□□ -0.25
CLN3-239ENST00000628023 TRAV2A0A0B4J234 112 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 ZNF98A6NK75 572 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 C3orf84H3BNL1 204 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 IFNA5P01569 189 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 PLP1P60201 277 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 B2MP61769 119 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 Q5BKY6 102 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 ZNF709Q8N972 641 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 INO80EQ8NBZ0 244 aaPredicted RBP13.49□□□□□ -0.25
CLN3-239ENST00000628023 SCRT1Q9BWW7 348 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 NPCDR1Q9BY65 106 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 ARV1Q9H2C2 271 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 DNAH9Q9NYC9 4486 aa13.49□□□□□ -0.25
CLN3-239ENST00000628023 H3BRN7 92 aa13.48□□□□□ -0.25
CLN3-239ENST00000628023 RPL29P47914 159 aaKnown RBP13.48□□□□□ -0.25
CLN3-239ENST00000628023 CMC4P56277 68 aaPredicted RBP13.48□□□□□ -0.25
CLN3-239ENST00000628023 ODF3L2Q3SX64 289 aa13.48□□□□□ -0.25
CLN3-239ENST00000628023 LEMD1Q68G75 181 aa13.48□□□□□ -0.25
CLN3-239ENST00000628023 SCGB1C1Q8TD33 95 aa13.48□□□□□ -0.25
CLN3-239ENST00000628023 UHRF2Q96PU4 802 aa13.48□□□□□ -0.25
CLN3-239ENST00000628023 SHANK2-AS3Q9BTD1 123 aa13.48□□□□□ -0.25
CLN3-239ENST00000628023 WDR61Q9GZS3 305 aaKnown RBP13.48□□□□□ -0.25
CLN3-239ENST00000628023 SLC25A32Q9H2D1 315 aa13.48□□□□□ -0.25
CLN3-239ENST00000628023 KCNIP2Q9NS61 270 aa13.48□□□□□ -0.25
CLN3-239ENST00000628023 SLC39A9Q9NUM3 307 aa13.48□□□□□ -0.25
CLN3-239ENST00000628023 PXMP4Q9Y6I8 212 aa13.48□□□□□ -0.25
CLN3-239ENST00000628023 KMT2CQ8NEZ4 4911 aaKnown RBP13.47□□□□□ -0.25
CLN3-239ENST00000628023 GALR1P47211 349 aa13.47□□□□□ -0.25
CLN3-239ENST00000628023 C10orf113Q5VZT2 155 aa13.47□□□□□ -0.25
CLN3-239ENST00000628023 OR1L4Q8NGR5 311 aa13.47□□□□□ -0.25
CLN3-239ENST00000628023 CHAC2Q8WUX2 184 aa13.47□□□□□ -0.25
CLN3-239ENST00000628023 AQP10Q96PS8 301 aa13.47□□□□□ -0.25
CLN3-239ENST00000628023 NRN1Q9NPD7 142 aa13.47□□□□□ -0.25
CLN3-239ENST00000628023 RNF24Q9Y225 148 aa13.47□□□□□ -0.25
CLN3-239ENST00000628023 STAB2Q8WWQ8 2551 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 ELOA3CA0A087WX78 387 aaPredicted RBP13.46□□□□□ -0.25
CLN3-239ENST00000628023 A8MZ25 164 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 C17orf112F2Z3M2 114 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 PRR20EP86478 221 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 PRR20CP86479 221 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 PRR20DP86480 221 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 PRR20BP86481 221 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 PRR20AP86496 221 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 LINC00305Q7Z4B0 112 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms