RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 LGI3Q8N145 548 aa8.2□□□□□ -1.1
CPNE3-210ENST00000621245 ZNF709Q8N972 641 aa8.2□□□□□ -1.1
CPNE3-210ENST00000621245 TRIM63Q969Q1 353 aa8.2□□□□□ -1.1
CPNE3-210ENST00000621245 C17orf77Q96MU5 243 aa8.2□□□□□ -1.1
CPNE3-210ENST00000621245 TRAV10A0A0B4J240 114 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 A0A0B4J2A0 478 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 C11orf94C9JXX5 98 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 PITX3O75364 302 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 SCGB2A1O75556 95 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 HLA-DRB4P13762 266 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 EIF2B2P49770 351 aaKnown RBP8.19□□□□□ -1.1
CPNE3-210ENST00000621245 CCR6P51684 374 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 TMEM41BQ5BJD5 291 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 RAB2BQ8WUD1 216 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 C20orf173Q96LM9 149 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 SHPKQ9UHJ6 478 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 HLA-DRB4X5D2U9 266 aa8.19□□□□□ -1.1
CPNE3-210ENST00000621245 ZFP92A6NM28 416 aa8.18□□□□□ -1.1
CPNE3-210ENST00000621245 AMBPP02760 352 aa8.18□□□□□ -1.1
CPNE3-210ENST00000621245 LYZP61626 148 aa8.18□□□□□ -1.1
CPNE3-210ENST00000621245 ETFRF1Q6IPR1 90 aa8.18□□□□□ -1.1
CPNE3-210ENST00000621245 ZNF705AQ6ZN79 300 aaPredicted RBP8.18□□□□□ -1.1
CPNE3-210ENST00000621245 TMEM182Q6ZP80 229 aaPredicted RBP8.18□□□□□ -1.1
CPNE3-210ENST00000621245 TMED4Q7Z7H5 227 aa8.18□□□□□ -1.1
CPNE3-210ENST00000621245 OR1S1Q8NH92 325 aa8.18□□□□□ -1.1
CPNE3-210ENST00000621245 LINC00052Q96N35 136 aa8.18□□□□□ -1.1
CPNE3-210ENST00000621245 SLC35B3Q9H1N7 401 aa8.18□□□□□ -1.1
CPNE3-210ENST00000621245 U3KQ87 197 aa8.18□□□□□ -1.1
CPNE3-210ENST00000621245 V9GYH0 126 aa8.18□□□□□ -1.1
CPNE3-210ENST00000621245 IGHV3OR16-12A0A075B7B8 117 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 DEFB131BA0A096LNP1 70 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 FABP12A6NFH5 140 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 ZNF705FA8MVS1 300 aaPredicted RBP8.17□□□□□ -1.1
CPNE3-210ENST00000621245 PRSS46E5RG02 174 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 ZNF705DP0CH99 300 aaPredicted RBP8.17□□□□□ -1.1
CPNE3-210ENST00000621245 ZNF705BP0CI00 300 aaPredicted RBP8.17□□□□□ -1.1
CPNE3-210ENST00000621245 PRB4P10163 310 aaPredicted RBP8.17□□□□□ -1.1
CPNE3-210ENST00000621245 GATA2P23769 480 aaPredicted RBP8.17□□□□□ -1.1
CPNE3-210ENST00000621245 NKX2-1P43699 371 aaPredicted RBP8.17□□□□□ -1.1
CPNE3-210ENST00000621245 AP2S1P53680 142 aaPredicted RBP8.17□□□□□ -1.1
CPNE3-210ENST00000621245 EMP1P54849 157 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 TMBIM6P55061 237 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 TCTAP57738 103 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 SNRPD3P62318 126 aaKnown RBP8.17□□□□□ -1.1
CPNE3-210ENST00000621245 ZNF79Q15937 498 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 RAB24Q969Q5 203 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 MAGT1Q9H0U3 335 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 SAV1Q9H4B6 383 aaPredicted RBP8.17□□□□□ -1.1
CPNE3-210ENST00000621245 RSL24D1Q9UHA3 163 aaKnown RBP8.17□□□□□ -1.1
CPNE3-210ENST00000621245 SCP2D1Q9UJQ7 156 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 KCNIP3Q9Y2W7 256 aa8.17□□□□□ -1.1
CPNE3-210ENST00000621245 A0A1B0GVY2 172 aa8.16□□□□□ -1.1
CPNE3-210ENST00000621245 PPP1R1AQ13522 171 aa8.16□□□□□ -1.1
CPNE3-210ENST00000621245 OR8G2PQ6IF36 304 aa8.16□□□□□ -1.1
CPNE3-210ENST00000621245 THAP8Q8NA92 274 aa8.16□□□□□ -1.1
CPNE3-210ENST00000621245 MCFD2Q8NI22 146 aa8.16□□□□□ -1.1
CPNE3-210ENST00000621245 SLC35E1Q96K37 410 aa8.16□□□□□ -1.1
CPNE3-210ENST00000621245 RNF126Q9BV68 326 aa8.16□□□□□ -1.1
CPNE3-210ENST00000621245 SLC25A32Q9H2D1 315 aa8.16□□□□□ -1.1
CPNE3-210ENST00000621245 SEPSECSQ9HD40 501 aaKnown RBP8.16□□□□□ -1.1
CPNE3-210ENST00000621245 H3BP45 60 aa8.15□□□□□ -1.1
CPNE3-210ENST00000621245 PRM2P04554 102 aa8.15□□□□□ -1.1
CPNE3-210ENST00000621245 GPX4P36969 197 aaPredicted RBP8.15□□□□□ -1.1
CPNE3-210ENST00000621245 IGFL4Q6B9Z1 124 aa8.15□□□□□ -1.1
CPNE3-210ENST00000621245 FOXI2Q6ZQN5 318 aa8.15□□□□□ -1.1
CPNE3-210ENST00000621245 NOXA1Q86UR1 476 aa8.15□□□□□ -1.1
CPNE3-210ENST00000621245 C1orf158Q8N1D5 194 aa8.15□□□□□ -1.1
CPNE3-210ENST00000621245 BCL7BQ9BQE9 202 aa8.15□□□□□ -1.1
CPNE3-210ENST00000621245 PAIP2BQ9ULR5 123 aaKnown RBP8.15□□□□□ -1.1
CPNE3-210ENST00000621245 M0R2N4 97 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 RTL8CO15255 209 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 CCNKO75909 580 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 HOXB5P09067 269 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 PSMB3P49720 205 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 PYDC2Q56P42 97 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 FAM78BQ5VT40 261 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 OR4B1Q8NGF8 309 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 COQ8AQ8NI60 647 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 TRGV9Q99603 122 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 C1QTNF4Q9BXJ3 329 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 RABL2AQ9UBK7 228 aaPredicted RBP8.14□□□□□ -1.11
CPNE3-210ENST00000621245 RABL2BQ9UNT1 228 aa8.14□□□□□ -1.11
CPNE3-210ENST00000621245 A0A0J9YX75 114 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 WRBO00258 174 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 ANXA3P12429 323 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 PAX9P55771 341 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 SRPXP78539 464 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 FAM222AQ5U5X8 452 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 AMTNQ6UX39 209 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 LRTM2Q8N967 370 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 SCGB3A2Q96PL1 93 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 NEU1Q99519 415 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 SLC25A22Q9H936 323 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 DKK2Q9UBU2 259 aa8.13□□□□□ -1.11
CPNE3-210ENST00000621245 TRAV8-2A0A0B4J237 113 aa8.12□□□□□ -1.11
CPNE3-210ENST00000621245 DUXBA0A1W2PPF3 345 aa8.12□□□□□ -1.11
CPNE3-210ENST00000621245 ADAP1O75689 374 aa8.12□□□□□ -1.11
CPNE3-210ENST00000621245 SFT2D2O95562 160 aa8.12□□□□□ -1.11
CPNE3-210ENST00000621245 NUTF2P61970 127 aaKnown RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms