RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 MIR17HGQ75NE6 70 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 STPG3Q8N7X2 389 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 FAM169BQ8N8A8 192 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 RAI1Q7Z5J4 1906 aaPredicted RBP11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 TRAV5A0A0B4J249 113 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 hDV102S1A0JD36 115 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 P0C879 139 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 EBLN2Q6P2I7 272 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 TEX50A0A1B0GTY4 177 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 C15orf61A6NNL5 157 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 SNAI2O43623 268 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 OCIAD2Q56VL3 154 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 WDR73Q6P4I2 378 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 SSUH2Q9Y2M2 353 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 IGHV2-26A0A0B4J1V2 119 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 IGLC7A0M8Q6 106 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 CFHR2P36980 270 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 SSBP2P81877 361 aaPredicted RBP11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 ERHP84090 104 aaKnown RBP11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 TEPPQ6URK8 271 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 FAM168AQ92567 244 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 PERPQ96FX8 193 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 NPVFQ9HCQ7 196 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 TRAV9-2A0A087WT02 112 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 IGHV3-35A0A0C4DH35 117 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 CGB3P0DN86 165 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 CGB7P0DN87 165 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 ORM2P19652 201 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 AMY1AP04745 511 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 GATA4P43694 442 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 MFAP2P55001 183 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 TCTAP57738 103 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 CX3CL1P78423 397 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 KLRD1Q13241 179 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 EFNB3Q15768 340 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 NUDT10Q8NFP7 164 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 PMCHL2Q9BQD1 86 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 LINC00312Q9Y6C7 94 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 CSMD2Q7Z408 3487 aa11.68□□□□□ -0.54
SHROOM1-208ENST00000617339 MUC21A0A0G2JKD1 596 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 MUC21A0A140T8X8 626 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 MOSP00540 346 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 VDAC2P45880 294 aaPredicted RBP11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 OR10J3Q5JRS4 329 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 MUC21Q5SSG8 566 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 IBA57Q5T440 356 aaKnown RBP11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 SPATA12Q7Z6I5 190 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 LINC00479Q96M42 142 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 MRPS16Q9Y3D3 137 aaKnown RBP11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 C18orf32Q8TCD1 76 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 TECRQ9NZ01 308 aaKnown RBP11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 FAM181BA6NEQ2 426 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 LOXP28300 417 aaPredicted RBP11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 SLC25A48Q6ZT89 311 aaKnown RBP11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 NUP37Q8NFH4 326 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 NPIPB3Q92617 1050 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 NUDT11Q96G61 164 aa11.67□□□□□ -0.54
SHROOM1-208ENST00000617339 FOXA3P55318 350 aaPredicted RBP11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 UBE2G1P62253 170 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 RHOBP62745 196 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 BLNKQ8WV28 456 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 CELSR2Q9HCU4 2923 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 VPS13CQ709C8 3753 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 TRAV30A0A087WSZ9 112 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 MT-CO2P00403 227 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 MT-ND6P03923 174 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 VMA21Q3ZAQ7 101 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 IGSF10Q6WRI0 2623 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 NAA38Q9BRA0 125 aaKnown RBP11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 ATP5J2P56134 94 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 VWC2Q2TAL6 325 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 DDB2Q92466 427 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 FBXL15Q9H469 300 aa11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 ZNF430Q9H8G1 570 aaPredicted RBP11.66□□□□□ -0.54
SHROOM1-208ENST00000617339 IGHV3OR16-8A0A075B7F1 116 aa11.65□□□□□ -0.54
SHROOM1-208ENST00000617339 TRBV9A0A0B4J1U6 114 aa11.65□□□□□ -0.54
SHROOM1-208ENST00000617339 LINC00173Q6ZV60 143 aa11.65□□□□□ -0.54
SHROOM1-208ENST00000617339 OR4F17Q8NGA8 305 aa11.65□□□□□ -0.54
SHROOM1-208ENST00000617339 UPK2O00526 184 aa11.65□□□□□ -0.54
SHROOM1-208ENST00000617339 HLA-DQA1P01909 254 aa11.65□□□□□ -0.54
SHROOM1-208ENST00000617339 KLF17Q5JT82 389 aaPredicted RBP11.65□□□□□ -0.54
SHROOM1-208ENST00000617339 OR2D3Q8NGH3 330 aa11.65□□□□□ -0.54
SHROOM1-208ENST00000617339 FAM222BQ8WU58 562 aa11.65□□□□□ -0.54
SHROOM1-208ENST00000617339 CORO2AQ92828 525 aa11.65□□□□□ -0.54
SHROOM1-208ENST00000617339 TRAV9-1A0A075B6T8 112 aa11.65□□□□□ -0.55
SHROOM1-208ENST00000617339 IGKV1OR2-108A0A075B7D4 117 aa11.65□□□□□ -0.55
SHROOM1-208ENST00000617339 OR4C46A6NHA9 309 aa11.65□□□□□ -0.55
SHROOM1-208ENST00000617339 SAP30O75446 220 aa11.65□□□□□ -0.55
SHROOM1-208ENST00000617339 MEGF9Q9H1U4 602 aa11.65□□□□□ -0.55
SHROOM1-208ENST00000617339 RBP4P02753 201 aa11.64□□□□□ -0.55
SHROOM1-208ENST00000617339 MAPK1IP1LQ8NDC0 245 aa11.64□□□□□ -0.55
SHROOM1-208ENST00000617339 H0YJW9 148 aa11.64□□□□□ -0.55
SHROOM1-208ENST00000617339 NABP2Q9BQ15 211 aa11.64□□□□□ -0.55
SHROOM1-208ENST00000617339 A0A087X0K7 114 aa11.64□□□□□ -0.55
SHROOM1-208ENST00000617339 TAX1BP3O14907 124 aa11.64□□□□□ -0.55
SHROOM1-208ENST00000617339 AREGP15514 252 aa11.64□□□□□ -0.55
SHROOM1-208ENST00000617339 PRNDQ9UKY0 176 aa11.64□□□□□ -0.55
SHROOM1-208ENST00000617339 HIVEP2P31629 2446 aa11.63□□□□□ -0.55
SHROOM1-208ENST00000617339 FBLL1A6NHQ2 334 aaKnown RBP11.63□□□□□ -0.55
SHROOM1-208ENST00000617339 PYYP10082 97 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms