RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 AGPAT2O15120 278 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 C16orf54Q6UWD8 224 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 CYP2G1PQ6ZSU1 146 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 OR1B1Q8NGR6 318 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 SCRT1Q9BWW7 348 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 SRD5A3Q9H8P0 318 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 RABAC1Q9UI14 185 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 OR5C1Q8NGR4 320 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 DCANP1Q8TF63 244 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 SPAG8Q99932 426 aaPredicted RBP10.01□□□□□ -0.81
LINC00540-202ENST00000616974 SMIM3Q9BZL3 60 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 SLC25A22Q9H936 323 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 NPVFQ9HCQ7 196 aa10.01□□□□□ -0.81
LINC00540-202ENST00000616974 LINC00869P0C866 280 aa10□□□□□ -0.81
LINC00540-202ENST00000616974 GCSAMLQ5JQS6 135 aa10□□□□□ -0.81
LINC00540-202ENST00000616974 MIC13Q5XKP0 118 aa10□□□□□ -0.81
LINC00540-202ENST00000616974 TRAV25A0A0B4J276 109 aa10□□□□□ -0.81
LINC00540-202ENST00000616974 E5RGE8 158 aa10□□□□□ -0.81
LINC00540-202ENST00000616974 PVALBP20472 110 aaPredicted RBP10□□□□□ -0.81
LINC00540-202ENST00000616974 TEPPQ6URK8 271 aa10□□□□□ -0.81
LINC00540-202ENST00000616974 GGTLC1Q9BX51 225 aa10□□□□□ -0.81
LINC00540-202ENST00000616974 MAP6D1Q9H9H5 199 aa10□□□□□ -0.81
LINC00540-202ENST00000616974 WFDC1Q9HC57 220 aa10□□□□□ -0.81
LINC00540-202ENST00000616974 ZMAT5Q9UDW3 170 aaKnown RBP10□□□□□ -0.81
LINC00540-202ENST00000616974 ZNF688P0C7X2 276 aa9.99□□□□□ -0.81
LINC00540-202ENST00000616974 EIF2B2P49770 351 aaKnown RBP9.99□□□□□ -0.81
LINC00540-202ENST00000616974 HAGHQ16775 308 aa9.99□□□□□ -0.81
LINC00540-202ENST00000616974 VWC2Q2TAL6 325 aa9.99□□□□□ -0.81
LINC00540-202ENST00000616974 IGFL4Q6B9Z1 124 aa9.99□□□□□ -0.81
LINC00540-202ENST00000616974 LAMTOR1Q6IAA8 161 aa9.99□□□□□ -0.81
LINC00540-202ENST00000616974 LINC00322Q6ZN03 302 aaPredicted RBP9.99□□□□□ -0.81
LINC00540-202ENST00000616974 TMEM37Q8WXS4 190 aa9.99□□□□□ -0.81
LINC00540-202ENST00000616974 ARL6Q9H0F7 186 aa9.99□□□□□ -0.81
LINC00540-202ENST00000616974 SLC45A2Q9UMX9 530 aa9.99□□□□□ -0.81
LINC00540-202ENST00000616974 EIF3GO75821 320 aaKnown RBP eCLIP9.98□□□□□ -0.81
LINC00540-202ENST00000616974 FAM110AQ9BQ89 295 aa9.98□□□□□ -0.81
LINC00540-202ENST00000616974 SLC25A32Q9H2D1 315 aa9.98□□□□□ -0.81
LINC00540-202ENST00000616974 UQCC1Q9NVA1 299 aa9.98□□□□□ -0.81
LINC00540-202ENST00000616974 WDR83OSQ9Y284 106 aa9.98□□□□□ -0.81
LINC00540-202ENST00000616974 K7EQG2 157 aa9.98□□□□□ -0.81
LINC00540-202ENST00000616974 CYCSP99999 105 aaKnown RBP9.98□□□□□ -0.81
LINC00540-202ENST00000616974 SIGLEC15Q6ZMC9 328 aa9.98□□□□□ -0.81
LINC00540-202ENST00000616974 STX12Q86Y82 276 aa9.98□□□□□ -0.81
LINC00540-202ENST00000616974 TUBA4BQ9H853 241 aa9.98□□□□□ -0.81
LINC00540-202ENST00000616974 ZNF98A6NK75 572 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 SCGB2A1O75556 95 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 OR5G3P0C626 314 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 CAMLGP49069 296 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 DEFB131AP59861 70 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 BAXQ07812 192 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 SLC25A39Q9BZJ4 359 aaPredicted RBP9.97□□□□□ -0.81
LINC00540-202ENST00000616974 TRAV5A0A0B4J249 113 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 A0A1W2PS18 150 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 H3BTX0 84 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 DNASE2O00115 360 aaPredicted RBP9.97□□□□□ -0.81
LINC00540-202ENST00000616974 RLN2P04090 185 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 RPL35AP18077 110 aaKnown RBP9.97□□□□□ -0.81
LINC00540-202ENST00000616974 FGF7P21781 194 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 RPL12P30050 165 aaKnown RBP9.97□□□□□ -0.81
LINC00540-202ENST00000616974 PPP1R14BQ96C90 147 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 TMEM147Q9BVK8 224 aa9.97□□□□□ -0.81
LINC00540-202ENST00000616974 PLECQ15149 4684 aaKnown RBP9.96□□□□□ -0.81
LINC00540-202ENST00000616974 OR4C46A6NHA9 309 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 KNCNA6PVL3 124 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 FNDC10F2Z333 226 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 H3BRN7 92 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 LYL1P12980 280 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 S100A11P31949 105 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 PRR20EP86478 221 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 PRR20CP86479 221 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 PRR20DP86480 221 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 PRR20BP86481 221 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 PRR20AP86496 221 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 GDF5OSQ5U4N7 250 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 RSG1Q9BU20 258 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 GGACTQ9BVM4 153 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 ARV1Q9H2C2 271 aa9.96□□□□□ -0.82
LINC00540-202ENST00000616974 A8MZ25 164 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 SPATA31B1PQ5VZV4 182 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 OR8I2Q8N0Y5 310 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 NPCDR1Q9BY65 106 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 HSPB11Q9Y547 144 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 SOCS3O14543 225 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 HLA-DMBP28068 263 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 HBG1P69891 147 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 HBG2P69892 147 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 OR2T35Q8NGX2 323 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 C20orf173Q96LM9 149 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 NRN1Q9NPD7 142 aa9.95□□□□□ -0.82
LINC00540-202ENST00000616974 F6UB75 175 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 PLP1P60201 277 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 PSMG4Q5JS54 123 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 SHANK2-AS3Q9BTD1 123 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 HIGD1AQ9Y241 93 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 MRPS12O15235 138 aaKnown RBP9.94□□□□□ -0.82
LINC00540-202ENST00000616974 HYPMO75409 117 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 GIPP09681 153 aaPredicted RBP9.94□□□□□ -0.82
LINC00540-202ENST00000616974 OPCMLQ14982 345 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 LINC00305Q7Z4B0 112 aa9.94□□□□□ -0.82
LINC00540-202ENST00000616974 RNF182Q8N6D2 247 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms