RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 H3BP45 60 aa13.91□□□□□ -0.18
CDX1-202ENST00000616154 IFNA10P01566 189 aa13.91□□□□□ -0.18
CDX1-202ENST00000616154 CRYBB3P26998 211 aa13.91□□□□□ -0.18
CDX1-202ENST00000616154 YPEL3P61236 119 aaPredicted RBP13.91□□□□□ -0.18
CDX1-202ENST00000616154 SPANXN5Q5MJ07 72 aa13.91□□□□□ -0.18
CDX1-202ENST00000616154 ETFRF1Q6IPR1 90 aa13.91□□□□□ -0.18
CDX1-202ENST00000616154 OR1S2Q8NGQ3 325 aa13.91□□□□□ -0.18
CDX1-202ENST00000616154 PHLDA1Q8WV24 401 aaPredicted RBP13.91□□□□□ -0.18
CDX1-202ENST00000616154 ST8SIA2Q92186 375 aa13.91□□□□□ -0.18
CDX1-202ENST00000616154 AQP10Q96PS8 301 aa13.91□□□□□ -0.18
CDX1-202ENST00000616154 TNFSF18Q9UNG2 199 aa13.91□□□□□ -0.18
CDX1-202ENST00000616154 DNAH10Q8IVF4 4471 aa13.91□□□□□ -0.18
CDX1-202ENST00000616154 IGSF23A1L1A6 192 aa13.9□□□□□ -0.18
CDX1-202ENST00000616154 FAM24AA6NFZ4 105 aa13.9□□□□□ -0.18
CDX1-202ENST00000616154 APOHP02749 345 aaPredicted RBP13.9□□□□□ -0.18
CDX1-202ENST00000616154 TFPI2P48307 235 aa13.9□□□□□ -0.18
CDX1-202ENST00000616154 RND2P52198 227 aa13.9□□□□□ -0.18
CDX1-202ENST00000616154 LILRB2Q8N423 598 aa13.9□□□□□ -0.18
CDX1-202ENST00000616154 U3KQE9 123 aa13.9□□□□□ -0.18
CDX1-202ENST00000616154 RNF222A6NCQ9 220 aa13.9□□□□□ -0.19
CDX1-202ENST00000616154 CAV2P51636 162 aa13.9□□□□□ -0.19
CDX1-202ENST00000616154 RAB11AP62491 216 aa13.9□□□□□ -0.19
CDX1-202ENST00000616154 TIGITQ495A1 244 aa13.9□□□□□ -0.19
CDX1-202ENST00000616154 TCF24Q7RTU0 167 aa13.9□□□□□ -0.19
CDX1-202ENST00000616154 ZNF546Q86UE3 836 aa13.9□□□□□ -0.19
CDX1-202ENST00000616154 TMEM231Q9H6L2 316 aa13.9□□□□□ -0.19
CDX1-202ENST00000616154 IGKV3-7A0A075B6H7 116 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 IGHV3OR16-13A0A075B7E8 117 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 IGHV3-74A0A0B4J1X5 117 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 A0A1W2PS18 150 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 METTL15P1P0C7V9 234 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 NPPCP23582 126 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 RPL12P30050 165 aaKnown RBP13.89□□□□□ -0.19
CDX1-202ENST00000616154 OR10J1P30954 320 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 SULT1A1P50225 295 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 BAXQ07812 192 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 ARL16Q0P5N6 197 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 METTL26Q96S19 204 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 RARRES2Q99969 163 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 SLC25A31Q9H0C2 315 aa13.89□□□□□ -0.19
CDX1-202ENST00000616154 C11orf68Q9H3H3 251 aaKnown RBP13.89□□□□□ -0.19
CDX1-202ENST00000616154 FXYD6-FXYD2A0A087WZ82 144 aa13.88□□□□□ -0.19
CDX1-202ENST00000616154 PFDN1O60925 122 aa13.88□□□□□ -0.19
CDX1-202ENST00000616154 PAFAH1B2P68402 229 aa13.88□□□□□ -0.19
CDX1-202ENST00000616154 LGALS9CQ6DKI2 356 aa13.88□□□□□ -0.19
CDX1-202ENST00000616154 GBGT1Q8N5D6 347 aa13.88□□□□□ -0.19
CDX1-202ENST00000616154 RPP25LQ8N5L8 163 aaKnown RBP13.88□□□□□ -0.19
CDX1-202ENST00000616154 HYLS1Q96M11 299 aa13.88□□□□□ -0.19
CDX1-202ENST00000616154 FNDC10F2Z333 226 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 DFFBO76075 338 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 IFNA4P05014 189 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 GPX4P36969 197 aaPredicted RBP13.87□□□□□ -0.19
CDX1-202ENST00000616154 ZNF345Q14585 488 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 ACOT7LQ6ZUV0 252 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 STX12Q86Y82 276 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 OR11H2Q8NH07 326 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 NPIPB3Q92617 1050 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 GGACTQ9BVM4 153 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 MFFQ9GZY8 342 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 MS4A6AQ9H2W1 248 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 HSPB11Q9Y547 144 aa13.87□□□□□ -0.19
CDX1-202ENST00000616154 DNAH6Q9C0G6 4158 aa13.86□□□□□ -0.19
CDX1-202ENST00000616154 CST7O76096 145 aa13.86□□□□□ -0.19
CDX1-202ENST00000616154 TOMM40O96008 361 aa13.86□□□□□ -0.19
CDX1-202ENST00000616154 NANOS2P60321 138 aaKnown RBP13.86□□□□□ -0.19
CDX1-202ENST00000616154 NHLH2Q02577 135 aa13.86□□□□□ -0.19
CDX1-202ENST00000616154 OR10P1Q8NGE3 313 aa13.86□□□□□ -0.19
CDX1-202ENST00000616154 C11orf45Q8TAV5 145 aa13.86□□□□□ -0.19
CDX1-202ENST00000616154 Q8WTZ3 238 aa13.86□□□□□ -0.19
CDX1-202ENST00000616154 VPS13DQ5THJ4 4388 aa13.86□□□□□ -0.19
CDX1-202ENST00000616154 DLK1P80370 383 aa13.85□□□□□ -0.19
CDX1-202ENST00000616154 OR2F1Q13607 317 aa13.85□□□□□ -0.19
CDX1-202ENST00000616154 VWC2Q2TAL6 325 aa13.85□□□□□ -0.19
CDX1-202ENST00000616154 ZFP69Q49AA0 526 aa13.85□□□□□ -0.19
CDX1-202ENST00000616154 INO80EQ8NBZ0 244 aaPredicted RBP13.85□□□□□ -0.19
CDX1-202ENST00000616154 IGHV3-66A0A0C4DH42 116 aa13.84□□□□□ -0.19
CDX1-202ENST00000616154 ARPC5O15511 151 aa13.84□□□□□ -0.19
CDX1-202ENST00000616154 CA1P00915 261 aaPredicted RBP13.84□□□□□ -0.19
CDX1-202ENST00000616154 S100A11P31949 105 aa13.84□□□□□ -0.19
CDX1-202ENST00000616154 HBG1P69891 147 aa13.84□□□□□ -0.19
CDX1-202ENST00000616154 HBG2P69892 147 aa13.84□□□□□ -0.19
CDX1-202ENST00000616154 USF2Q15853 346 aaPredicted RBP13.84□□□□□ -0.19
CDX1-202ENST00000616154 OR8G2PQ6IF36 304 aa13.84□□□□□ -0.19
CDX1-202ENST00000616154 KCNRGQ8N5I3 272 aa13.84□□□□□ -0.19
CDX1-202ENST00000616154 ACY3Q96HD9 319 aa13.84□□□□□ -0.19
CDX1-202ENST00000616154 GRAMD2BQ96HH9 432 aa13.84□□□□□ -0.19
CDX1-202ENST00000616154 NARS2Q96I59 477 aaKnown RBP13.84□□□□□ -0.19
CDX1-202ENST00000616154 IGKV1D-37A0A075B6S9 117 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 K7EQG2 157 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 DNASE2O00115 360 aaPredicted RBP13.83□□□□□ -0.2
CDX1-202ENST00000616154 HNRNPCP07910 306 aaKnown RBP eCLIP13.83□□□□□ -0.2
CDX1-202ENST00000616154 CXCL2P19875 107 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 NUP62P37198 522 aaPredicted RBP13.83□□□□□ -0.2
CDX1-202ENST00000616154 DEFB131AP59861 70 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 SLC38A11Q08AI6 406 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 GAMTQ14353 236 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 ATP6V1FQ16864 119 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 C16orf54Q6UWD8 224 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 DCANP1Q8TF63 244 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 GLMPQ8WWB7 406 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms