RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 PRSS1P07477 247 aa10.15□□□□□ -0.78
MSH6-213ENST00000614496 TMEM167AQ8TBQ9 72 aa10.15□□□□□ -0.78
MSH6-213ENST00000614496 TMEM189A5PLL7 270 aa10.15□□□□□ -0.78
MSH6-213ENST00000614496 MBD3L4A6NDZ8 208 aaPredicted RBP10.15□□□□□ -0.78
MSH6-213ENST00000614496 MBD3L3A6NE82 208 aaPredicted RBP10.15□□□□□ -0.78
MSH6-213ENST00000614496 MBD3L5A6NJ08 208 aaPredicted RBP10.15□□□□□ -0.78
MSH6-213ENST00000614496 MBD3L2Q8NHZ7 208 aaPredicted RBP10.15□□□□□ -0.78
MSH6-213ENST00000614496 DDB2Q92466 427 aa10.15□□□□□ -0.78
MSH6-213ENST00000614496 NDUFA4L2Q9NRX3 87 aa10.15□□□□□ -0.78
MSH6-213ENST00000614496 A0A1B0GUT8 65 aa10.15□□□□□ -0.79
MSH6-213ENST00000614496 J3KRW8 73 aa10.15□□□□□ -0.79
MSH6-213ENST00000614496 RPL11P62913 178 aaKnown RBP10.15□□□□□ -0.79
MSH6-213ENST00000614496 PSG1P11464 419 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 CNTFRP26992 372 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 FXYD7P58549 80 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 TWIST1Q15672 202 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 TP53TG3Q9ULZ0 132 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 TNRC6AQ8NDV7 1962 aaKnown RBP10.14□□□□□ -0.79
MSH6-213ENST00000614496 IGHV3OR16-13A0A075B7E8 117 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 IGHV3-74A0A0B4J1X5 117 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 FOXC1Q12948 553 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 MPV17L2Q567V2 206 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 KLF17Q5JT82 389 aaPredicted RBP10.14□□□□□ -0.79
MSH6-213ENST00000614496 LINC01560Q8TB33 94 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 FMC1Q96HJ9 113 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 CGB1A6NKQ9 187 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 C12orf54Q6X4T0 127 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 PPP1R27Q86WC6 154 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 TEX45Q8NA69 505 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 TMUB1Q9BVT8 246 aa10.14□□□□□ -0.79
MSH6-213ENST00000614496 RALYQ9UKM9 306 aaKnown RBP10.14□□□□□ -0.79
MSH6-213ENST00000614496 E7EUB6 86 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 TCRAP04437 139 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 Q8N7P7 452 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 DKK4Q9UBT3 224 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 SMIM27A0A1W2PRY6 76 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 ITGB1BP1O14713 200 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 OR2J3O76001 311 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 CKS2P33552 79 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 C18orf15Q96N68 181 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 TMEM133Q9H2Q1 129 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 F11RQ9Y624 299 aaKnown RBP10.13□□□□□ -0.79
MSH6-213ENST00000614496 FNDC10F2Z333 226 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 CFHR2P36980 270 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 ADIPOQQ15848 244 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 OR10AG1Q8NH19 301 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 FAM57AQ8TBR7 257 aa10.13□□□□□ -0.79
MSH6-213ENST00000614496 IGLL1P15814 213 aa10.12□□□□□ -0.79
MSH6-213ENST00000614496 ALKBH7Q9BT30 221 aaPredicted RBP10.12□□□□□ -0.79
MSH6-213ENST00000614496 ZNF503Q96F45 646 aa10.12□□□□□ -0.79
MSH6-213ENST00000614496 MRPL27Q9P0M9 148 aaKnown RBP10.12□□□□□ -0.79
MSH6-213ENST00000614496 UFC1Q9Y3C8 167 aa10.12□□□□□ -0.79
MSH6-213ENST00000614496 TMEM178BH3BS89 294 aa10.12□□□□□ -0.79
MSH6-213ENST00000614496 FBLN7Q53RD9 439 aa10.12□□□□□ -0.79
MSH6-213ENST00000614496 TMEM116Q8NCL8 245 aa10.12□□□□□ -0.79
MSH6-213ENST00000614496 PRSS46E5RG02 174 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 TM4SF20Q53R12 229 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 OR4A5Q8NH83 315 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 RNASE6Q93091 150 aaKnown RBP10.11□□□□□ -0.79
MSH6-213ENST00000614496 ABHD17AQ96GS6 310 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 FAM215AQ9Y5M1 114 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 CREBBPQ92793 2442 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 OTOGLQ3ZCN5 2332 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 M0R3E3 92 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 CEACAM3P40198 252 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 ECSCRQ19T08 205 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 FBLL1A6NHQ2 334 aaKnown RBP10.11□□□□□ -0.79
MSH6-213ENST00000614496 IGHV1-8P0DP01 117 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 THYN1Q9P016 225 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 RNF114Q9Y508 228 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 A0A087X0K7 114 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 C8orf46Q8TAG6 207 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 FXYD5Q96DB9 178 aa10.11□□□□□ -0.79
MSH6-213ENST00000614496 NAA38Q9BRA0 125 aaKnown RBP10.11□□□□□ -0.79
MSH6-213ENST00000614496 MRPL36Q9P0J6 103 aaKnown RBP10.11□□□□□ -0.79
MSH6-213ENST00000614496 IGHV3-49A0A0A0MS15 119 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 RELQ04864 619 aaPredicted RBP10.1□□□□□ -0.79
MSH6-213ENST00000614496 POU2AF1Q16633 256 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 EBLN2Q6P2I7 272 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 OR5AN1Q8NGI8 311 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 GAGE10A6NGK3 116 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 SYS1-DBNDD2H3BUS1 97 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 LHBP01229 141 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 CLEC3BP05452 202 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 PATE2Q6UY27 113 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 SLC25A39Q9BZJ4 359 aaPredicted RBP10.1□□□□□ -0.79
MSH6-213ENST00000614496 OTORQ9NRC9 128 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 PSG8Q9UQ74 426 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.1□□□□□ -0.794e-7■■□□□ 11.5
MSH6-213ENST00000614496 IGLV3-9A0A075B6K5 115 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 ZNF833PQ6ZTB9 187 aa10.1□□□□□ -0.79
MSH6-213ENST00000614496 ADAMTS20P59510 1910 aa10.09□□□□□ -0.79
MSH6-213ENST00000614496 IGKV3-7A0A075B6H7 116 aa10.09□□□□□ -0.79
MSH6-213ENST00000614496 IGHV3-66A0A0C4DH42 116 aa10.09□□□□□ -0.79
MSH6-213ENST00000614496 SEM1Q6ZVN7 128 aa10.09□□□□□ -0.79
MSH6-213ENST00000614496 ATP5L2Q7Z4Y8 100 aa10.09□□□□□ -0.79
MSH6-213ENST00000614496 FAM167A-AS1Q96KT0 104 aa10.09□□□□□ -0.79
MSH6-213ENST00000614496 PRELID3AQ96N28 172 aa10.09□□□□□ -0.79
MSH6-213ENST00000614496 GATA4P43694 442 aa10.09□□□□□ -0.79
MSH6-213ENST00000614496 COMPP49747 757 aaPredicted RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms