RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MBD2Q9UBB5 411 aa12.39□□□□□ -0.43
CCDC28A-202ENST00000611852 BOLA1Q9Y3E2 137 aa12.39□□□□□ -0.43
CCDC28A-202ENST00000611852 SELENOTP62341 195 aa12.38□□□□□ -0.43
CCDC28A-202ENST00000611852 C16orf54Q6UWD8 224 aa12.38□□□□□ -0.43
CCDC28A-202ENST00000611852 ZNF546Q86UE3 836 aa12.38□□□□□ -0.43
CCDC28A-202ENST00000611852 STPG3Q8N7X2 389 aa12.38□□□□□ -0.43
CCDC28A-202ENST00000611852 TMEM147Q9BVK8 224 aa12.38□□□□□ -0.43
CCDC28A-202ENST00000611852 IGKV3-7A0A075B6H7 116 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 LYL1P12980 280 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 BAXQ07812 192 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 ATP6V1FQ16864 119 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 LGALSLQ3ZCW2 172 aaPredicted RBP12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 OR5C1Q8NGR4 320 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 GLMPQ8WWB7 406 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 MGST2Q99735 147 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 WDR83OSQ9Y284 106 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 OR4C46A6NHA9 309 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 AGPAT2O15120 278 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 IGHV4-30-4P0DP06 118 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 ORM2P19652 201 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 RPL11P62913 178 aaKnown RBP12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 INO80EQ8NBZ0 244 aaPredicted RBP12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 MFFQ9GZY8 342 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 C19orf73Q9NVV2 129 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 PFDN2Q9UHV9 154 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 SLC45A2Q9UMX9 530 aa12.37□□□□□ -0.43
CCDC28A-202ENST00000611852 UBE2L5PA0A1B0GUS4 154 aa12.36□□□□□ -0.43
CCDC28A-202ENST00000611852 LINC00869P0C866 280 aa12.36□□□□□ -0.43
CCDC28A-202ENST00000611852 NUP62P37198 522 aaPredicted RBP12.36□□□□□ -0.43
CCDC28A-202ENST00000611852 ZNF345Q14585 488 aa12.36□□□□□ -0.43
CCDC28A-202ENST00000611852 GBGT1Q8N5D6 347 aa12.36□□□□□ -0.43
CCDC28A-202ENST00000611852 WFDC10AQ9H1F0 79 aa12.36□□□□□ -0.43
CCDC28A-202ENST00000611852 MS4A6AQ9H2W1 248 aa12.36□□□□□ -0.43
CCDC28A-202ENST00000611852 TNFSF18Q9UNG2 199 aa12.36□□□□□ -0.43
CCDC28A-202ENST00000611852 HELTA6NFD8 242 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 A8MZ25 164 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 OR11H12B2RN74 326 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 CXCL2P19875 107 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 RPL12P30050 165 aaKnown RBP12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 TFPI2P48307 235 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 CAMLGP49069 296 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 PLP1P60201 277 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 PAFAH1B2P68402 229 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 RAB31Q13636 194 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 OR1B1Q8NGR6 318 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 B9D2Q9BPU9 175 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 DOK5Q9P104 306 aa12.35□□□□□ -0.43
CCDC28A-202ENST00000611852 A0A0D9SG52 128 aa12.34□□□□□ -0.43
CCDC28A-202ENST00000611852 FRMD6-AS1P0C7T7 363 aa12.34□□□□□ -0.43
CCDC28A-202ENST00000611852 CLINT1Q14677 625 aa12.34□□□□□ -0.43
CCDC28A-202ENST00000611852 ODF3L2Q3SX64 289 aa12.34□□□□□ -0.43
CCDC28A-202ENST00000611852 DEFB125Q8N687 156 aa12.34□□□□□ -0.43
CCDC28A-202ENST00000611852 TRAV2A0A0B4J234 112 aa12.33□□□□□ -0.44
CCDC28A-202ENST00000611852 DNASE2O00115 360 aaPredicted RBP12.33□□□□□ -0.44
CCDC28A-202ENST00000611852 HYPMO75409 117 aa12.33□□□□□ -0.44
CCDC28A-202ENST00000611852 AP2S1P53680 142 aaPredicted RBP12.33□□□□□ -0.44
CCDC28A-202ENST00000611852 C1orf194Q5T5A4 169 aa12.33□□□□□ -0.44
CCDC28A-202ENST00000611852 WFDC3Q8IUB2 231 aa12.33□□□□□ -0.44
CCDC28A-202ENST00000611852 STXBP6Q8NFX7 210 aa12.33□□□□□ -0.44
CCDC28A-202ENST00000611852 FAM110AQ9BQ89 295 aa12.33□□□□□ -0.44
CCDC28A-202ENST00000611852 GGTLC1Q9BX51 225 aa12.33□□□□□ -0.44
CCDC28A-202ENST00000611852 ARL6Q9H0F7 186 aa12.33□□□□□ -0.44
CCDC28A-202ENST00000611852 ZNF98A6NK75 572 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 FGF7P21781 194 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 OPCMLQ14982 345 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 PXDC1Q5TGL8 231 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 SIGLEC15Q6ZMC9 328 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 TMUB2Q71RG4 321 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 TUBA4BQ9H853 241 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 UBQLN2Q9UHD9 624 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 HIGD1AQ9Y241 93 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 TGP01266 2768 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 RNF222A6NCQ9 220 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 RGS13O14921 159 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 MPDU1O75352 247 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 OR5G3P0C626 314 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 RPL29P47914 159 aaKnown RBP12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 PRR20EP86478 221 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 PRR20CP86479 221 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 PRR20DP86480 221 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 PRR20BP86481 221 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 PRR20AP86496 221 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 MIC13Q5XKP0 118 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 PATE2Q6UY27 113 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 KCNRGQ8N5I3 272 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 DCANP1Q8TF63 244 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 SLC25A39Q9BZJ4 359 aaPredicted RBP12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 FBXL17Q9UF56 701 aa12.32□□□□□ -0.44
CCDC28A-202ENST00000611852 KANTRA0A1W2PQU2 76 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 H3BRN7 92 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 K7EQG2 157 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 S100A7P31151 101 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 IFITM2Q01629 132 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 OR8I2Q8N0Y5 310 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 FAM24BQ8N5W8 94 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 AQP10Q96PS8 301 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 UHRF2Q96PU4 802 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 ATP5SQ99766 215 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 SHANK2-AS3Q9BTD1 123 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 NPCDR1Q9BY65 106 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms