RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PMS2P5A8MQ11 134 aa14.38□□□□□ -0.11
UPF1-212ENST00000601689 DEDDO75618 318 aa14.38□□□□□ -0.11
UPF1-212ENST00000601689 ORM2P19652 201 aa14.38□□□□□ -0.11
UPF1-212ENST00000601689 DEFB131AP59861 70 aa14.38□□□□□ -0.11
UPF1-212ENST00000601689 RAB32Q13637 225 aa14.38□□□□□ -0.11
UPF1-212ENST00000601689 SAMD13Q5VXD3 122 aa14.38□□□□□ -0.11
UPF1-212ENST00000601689 APRG1Q8IVJ8 170 aa14.38□□□□□ -0.11
UPF1-212ENST00000601689 STHQ8IWL8 128 aa14.38□□□□□ -0.11
UPF1-212ENST00000601689 NMES1Q9C002 83 aa14.38□□□□□ -0.11
UPF1-212ENST00000601689 NRN1Q9NPD7 142 aa14.38□□□□□ -0.11
UPF1-212ENST00000601689 K7EQG2 157 aa14.37□□□□□ -0.11
UPF1-212ENST00000601689 RPL35AP18077 110 aaKnown RBP14.37□□□□□ -0.11
UPF1-212ENST00000601689 OR1B1Q8NGR6 318 aa14.37□□□□□ -0.11
UPF1-212ENST00000601689 SEPSECSQ9HD40 501 aaKnown RBP14.37□□□□□ -0.11
UPF1-212ENST00000601689 PTTG1O95997 202 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 PET100P0DJ07 73 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 S100A11P31949 105 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 ID1P41134 155 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 GALR1P47211 349 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 SLC38A11Q08AI6 406 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 Q6ZWC4 215 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 ZNF546Q86UE3 836 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 GPR82Q96P67 336 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 CITED4Q96RK1 184 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 SLC25A31Q9H0C2 315 aa14.36□□□□□ -0.11
UPF1-212ENST00000601689 LYRM2Q9NU23 88 aaPredicted RBP14.36□□□□□ -0.11
UPF1-212ENST00000601689 FAM24AA6NFZ4 105 aa14.35□□□□□ -0.11
UPF1-212ENST00000601689 HYPMO75409 117 aa14.35□□□□□ -0.11
UPF1-212ENST00000601689 ZNF688P0C7X2 276 aa14.35□□□□□ -0.11
UPF1-212ENST00000601689 SULT1A1P50225 295 aa14.35□□□□□ -0.11
UPF1-212ENST00000601689 PXDC1Q5TGL8 231 aa14.35□□□□□ -0.11
UPF1-212ENST00000601689 DCANP1Q8TF63 244 aa14.35□□□□□ -0.11
UPF1-212ENST00000601689 CSTL1Q9H114 145 aa14.35□□□□□ -0.11
UPF1-212ENST00000601689 E5RGE8 158 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 CCNKO75909 580 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 CST7O76096 145 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 OR5G3P0C626 314 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 LINC00869P0C866 280 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 MEOX2P50222 304 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 ATP6V1FQ16864 119 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 LEMD1Q68G75 181 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 TMEM217Q8N7C4 229 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 SLC25A22Q9H936 323 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 UQCC1Q9NVA1 299 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 HIGD1AQ9Y241 93 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 TP53TG1Q9Y2A0 90 aa14.34□□□□□ -0.11
UPF1-212ENST00000601689 GATA2P23769 480 aaPredicted RBP14.33□□□□□ -0.12
UPF1-212ENST00000601689 IL15RAQ13261 267 aa14.33□□□□□ -0.12
UPF1-212ENST00000601689 LRRC37A5PQ49AS3 106 aa14.33□□□□□ -0.12
UPF1-212ENST00000601689 Q6ZRG5 221 aa14.33□□□□□ -0.12
UPF1-212ENST00000601689 TMEM252Q8N6L7 170 aa14.33□□□□□ -0.12
UPF1-212ENST00000601689 IL17DQ8TAD2 202 aa14.33□□□□□ -0.12
UPF1-212ENST00000601689 ZNF98A6NK75 572 aa14.32□□□□□ -0.12
UPF1-212ENST00000601689 C3orf84H3BNL1 204 aa14.32□□□□□ -0.12
UPF1-212ENST00000601689 SIX6O95475 246 aa14.32□□□□□ -0.12
UPF1-212ENST00000601689 TMEM41BQ5BJD5 291 aa14.32□□□□□ -0.12
UPF1-212ENST00000601689 PSMG4Q5JS54 123 aa14.32□□□□□ -0.12
UPF1-212ENST00000601689 DOK5Q9P104 306 aa14.32□□□□□ -0.12
UPF1-212ENST00000601689 AGPAT2O15120 278 aa14.31□□□□□ -0.12
UPF1-212ENST00000601689 SPRY2O43597 315 aa14.31□□□□□ -0.12
UPF1-212ENST00000601689 RPL7P18124 248 aaKnown RBP14.31□□□□□ -0.12
UPF1-212ENST00000601689 PLP1P60201 277 aa14.31□□□□□ -0.12
UPF1-212ENST00000601689 ZNF124Q15973 351 aa14.31□□□□□ -0.12
UPF1-212ENST00000601689 ARL6Q9H0F7 186 aa14.31□□□□□ -0.12
UPF1-212ENST00000601689 RETNQ9HD89 108 aa14.31□□□□□ -0.12
UPF1-212ENST00000601689 ELOA3CA0A087WX78 387 aaPredicted RBP14.3□□□□□ -0.12
UPF1-212ENST00000601689 CAMLGP49069 296 aa14.3□□□□□ -0.12
UPF1-212ENST00000601689 NUTF2P61970 127 aaKnown RBP14.3□□□□□ -0.12
UPF1-212ENST00000601689 BAXQ07812 192 aa14.3□□□□□ -0.12
UPF1-212ENST00000601689 ARL16Q0P5N6 197 aa14.3□□□□□ -0.12
UPF1-212ENST00000601689 DEFB135Q30KP9 77 aa14.3□□□□□ -0.12
UPF1-212ENST00000601689 MORN3Q6PF18 240 aaPredicted RBP14.3□□□□□ -0.12
UPF1-212ENST00000601689 FAM24BQ8N5W8 94 aa14.3□□□□□ -0.12
UPF1-212ENST00000601689 MUC7Q8TAX7 377 aa14.3□□□□□ -0.12
UPF1-212ENST00000601689 SLC25A39Q9BZJ4 359 aaPredicted RBP14.3□□□□□ -0.12
UPF1-212ENST00000601689 HUWE1Q7Z6Z7 4374 aaKnown RBP14.3□□□□□ -0.12
UPF1-212ENST00000601689 MPDU1O75352 247 aa14.29□□□□□ -0.12
UPF1-212ENST00000601689 SPP1P10451 314 aa14.29□□□□□ -0.12
UPF1-212ENST00000601689 ATF4P18848 351 aaPredicted RBP14.29□□□□□ -0.12
UPF1-212ENST00000601689 PSMB3P49720 205 aa14.29□□□□□ -0.12
UPF1-212ENST00000601689 ACTL10Q5JWF8 245 aa14.29□□□□□ -0.12
UPF1-212ENST00000601689 TMEM182Q6ZP80 229 aaPredicted RBP14.29□□□□□ -0.12
UPF1-212ENST00000601689 PPP1R1CQ8WVI7 109 aa14.29□□□□□ -0.12
UPF1-212ENST00000601689 C16orf92Q96LL3 132 aa14.29□□□□□ -0.12
UPF1-212ENST00000601689 LINC00052Q96N35 136 aa14.29□□□□□ -0.12
UPF1-212ENST00000601689 C11orf1Q9H5F2 150 aa14.29□□□□□ -0.12
UPF1-212ENST00000601689 ISLRO14498 428 aa14.28□□□□□ -0.12
UPF1-212ENST00000601689 COX7A2P2O60397 106 aa14.28□□□□□ -0.12
UPF1-212ENST00000601689 CA1P00915 261 aaPredicted RBP14.28□□□□□ -0.12
UPF1-212ENST00000601689 OR1L4Q8NGR5 311 aa14.28□□□□□ -0.12
UPF1-212ENST00000601689 GATAD1Q8WUU5 269 aa14.28□□□□□ -0.12
UPF1-212ENST00000601689 OVOL2Q9BRP0 275 aa14.28□□□□□ -0.12
UPF1-212ENST00000601689 SHANK2-AS3Q9BTD1 123 aa14.28□□□□□ -0.12
UPF1-212ENST00000601689 ARV1Q9H2C2 271 aa14.28□□□□□ -0.12
UPF1-212ENST00000601689 UBE2L5PA0A1B0GUS4 154 aa14.27□□□□□ -0.13
UPF1-212ENST00000601689 IGSF23A1L1A6 192 aa14.27□□□□□ -0.13
UPF1-212ENST00000601689 H3BRN7 92 aa14.27□□□□□ -0.13
UPF1-212ENST00000601689 LYL1P12980 280 aa14.27□□□□□ -0.13
UPF1-212ENST00000601689 RNF183Q96D59 192 aa14.27□□□□□ -0.13
UPF1-212ENST00000601689 PFDN5Q99471 154 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 1297.1 ms