RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 UBE2CO00762 179 aa11.96□□□□□ -0.49
LSM4-206ENST00000600289 PVALBP20472 110 aaPredicted RBP11.96□□□□□ -0.49
LSM4-206ENST00000600289 APOC4P55056 127 aa11.96□□□□□ -0.49
LSM4-206ENST00000600289 LYZP61626 148 aa11.96□□□□□ -0.49
LSM4-206ENST00000600289 SIGLEC15Q6ZMC9 328 aa11.96□□□□□ -0.49
LSM4-206ENST00000600289 STXBP6Q8NFX7 210 aa11.96□□□□□ -0.49
LSM4-206ENST00000600289 PBDC1Q9BVG4 233 aa11.96□□□□□ -0.49
LSM4-206ENST00000600289 MGAT4CQ9UBM8 478 aa11.96□□□□□ -0.49
LSM4-206ENST00000600289 DEDDO75618 318 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 SELENOTP62341 195 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 OR2F1Q13607 317 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 RAB32Q13637 225 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 CYP2G1PQ6ZSU1 146 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 Q6ZWC4 215 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 APRG1Q8IVJ8 170 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 FAM24BQ8N5W8 94 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 STPG3Q8N7X2 389 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 NMES1Q9C002 83 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 EDA2RQ9HAV5 297 aa11.95□□□□□ -0.5
LSM4-206ENST00000600289 LYRM2Q9NU23 88 aaPredicted RBP11.95□□□□□ -0.5
LSM4-206ENST00000600289 SMCO3A2RU48 225 aa11.94□□□□□ -0.5
LSM4-206ENST00000600289 PTTG1O95997 202 aa11.94□□□□□ -0.5
LSM4-206ENST00000600289 S100A7P31151 101 aa11.94□□□□□ -0.5
LSM4-206ENST00000600289 PLP1P60201 277 aa11.94□□□□□ -0.5
LSM4-206ENST00000600289 ARL16Q0P5N6 197 aa11.94□□□□□ -0.5
LSM4-206ENST00000600289 TEPPQ6URK8 271 aa11.94□□□□□ -0.5
LSM4-206ENST00000600289 TMEM182Q6ZP80 229 aaPredicted RBP11.94□□□□□ -0.5
LSM4-206ENST00000600289 WFDC3Q8IUB2 231 aa11.94□□□□□ -0.5
LSM4-206ENST00000600289 NRN1Q9NPD7 142 aa11.94□□□□□ -0.5
LSM4-206ENST00000600289 TP53TG1Q9Y2A0 90 aa11.94□□□□□ -0.5
LSM4-206ENST00000600289 GOSR2O14653 212 aa11.93□□□□□ -0.5
LSM4-206ENST00000600289 DEFB131AP59861 70 aa11.93□□□□□ -0.5
LSM4-206ENST00000600289 RRAS2P62070 204 aaPredicted RBP11.93□□□□□ -0.5
LSM4-206ENST00000600289 ZNF124Q15973 351 aa11.93□□□□□ -0.5
LSM4-206ENST00000600289 RETNQ9HD89 108 aa11.93□□□□□ -0.5
LSM4-206ENST00000600289 PLECQ15149 4684 aaKnown RBP11.92□□□□□ -0.5
LSM4-206ENST00000600289 SULT1A1P50225 295 aa11.92□□□□□ -0.5
LSM4-206ENST00000600289 CAV2P51636 162 aa11.92□□□□□ -0.5
LSM4-206ENST00000600289 S100A10P60903 97 aa11.92□□□□□ -0.5
LSM4-206ENST00000600289 CYCSP99999 105 aaKnown RBP11.92□□□□□ -0.5
LSM4-206ENST00000600289 SLC38A11Q08AI6 406 aa11.92□□□□□ -0.5
LSM4-206ENST00000600289 VWC2Q2TAL6 325 aa11.92□□□□□ -0.5
LSM4-206ENST00000600289 GATA2P23769 480 aaPredicted RBP11.91□□□□□ -0.5
LSM4-206ENST00000600289 BCAP31P51572 246 aa11.91□□□□□ -0.5
LSM4-206ENST00000600289 PXDC1Q5TGL8 231 aa11.91□□□□□ -0.5
LSM4-206ENST00000600289 SAMD13Q5VXD3 122 aa11.91□□□□□ -0.5
LSM4-206ENST00000600289 ZNF546Q86UE3 836 aa11.91□□□□□ -0.5
LSM4-206ENST00000600289 TMEM252Q8N6L7 170 aa11.91□□□□□ -0.5
LSM4-206ENST00000600289 OVOL2Q9BRP0 275 aa11.91□□□□□ -0.5
LSM4-206ENST00000600289 TMEM147Q9BVK8 224 aa11.91□□□□□ -0.5
LSM4-206ENST00000600289 IGSF23A1L1A6 192 aa11.9□□□□□ -0.5
LSM4-206ENST00000600289 FAM24AA6NFZ4 105 aa11.9□□□□□ -0.5
LSM4-206ENST00000600289 ZNF98A6NK75 572 aa11.9□□□□□ -0.5
LSM4-206ENST00000600289 SIX6O95475 246 aa11.9□□□□□ -0.5
LSM4-206ENST00000600289 ZNF688P0C7X2 276 aa11.9□□□□□ -0.5
LSM4-206ENST00000600289 LINC00869P0C866 280 aa11.9□□□□□ -0.5
LSM4-206ENST00000600289 H2BFSP57053 126 aa11.9□□□□□ -0.5
LSM4-206ENST00000600289 SNRPD3P62318 126 aaKnown RBP11.9□□□□□ -0.5
LSM4-206ENST00000600289 STX12Q86Y82 276 aa11.9□□□□□ -0.5
LSM4-206ENST00000600289 PPP1R14BQ96C90 147 aa11.9□□□□□ -0.5
LSM4-206ENST00000600289 GPR82Q96P67 336 aa11.9□□□□□ -0.5
LSM4-206ENST00000600289 E5RGE8 158 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 H3BRN7 92 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 SOCS3O14543 225 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 AGPAT2O15120 278 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 SSNA1O43805 119 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 CST7O76096 145 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 LYL1P12980 280 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 RPL35AP18077 110 aaKnown RBP11.89□□□□□ -0.51
LSM4-206ENST00000600289 ORM2P19652 201 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 S100A11P31949 105 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 MEOX2P50222 304 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 HBG1P69891 147 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 HBG2P69892 147 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 ATP6V1FQ16864 119 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 LEMD1Q68G75 181 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 S100A7AQ86SG5 101 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 TRPT1Q86TN4 253 aaKnown RBP11.89□□□□□ -0.51
LSM4-206ENST00000600289 OR8I2Q8N0Y5 310 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 OR1B1Q8NGR6 318 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 RNF183Q96D59 192 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 CSTL1Q9H114 145 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 SLC25A32Q9H2D1 315 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 UQCC1Q9NVA1 299 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 WDR83OSQ9Y284 106 aa11.89□□□□□ -0.51
LSM4-206ENST00000600289 SPRY2O43597 315 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 HYPMO75409 117 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 RLN2P04090 185 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 GALR1P47211 349 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 PSMB3P49720 205 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 RAP2BP61225 183 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 STHQ8IWL8 128 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 CHAC2Q8WUX2 184 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 MGST2Q99735 147 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 SHANK2-AS3Q9BTD1 123 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 SLC25A39Q9BZJ4 359 aaPredicted RBP11.88□□□□□ -0.51
LSM4-206ENST00000600289 RNF24Q9Y225 148 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 HIGD1AQ9Y241 93 aa11.88□□□□□ -0.51
LSM4-206ENST00000600289 AGRNO00468 2067 aa11.87□□□□□ -0.51
LSM4-206ENST00000600289 DEFB135Q30KP9 77 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms