RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 OPCMLQ14982 345 aa7.75□□□□□ -1.17
VRK3-214ENST00000598553 RBMY1FQ15415 496 aaKnown RBP7.75□□□□□ -1.17
VRK3-214ENST00000598553 CLLU1Q5K131 121 aa7.75□□□□□ -1.17
VRK3-214ENST00000598553 GDF5OSQ5U4N7 250 aa7.75□□□□□ -1.17
VRK3-214ENST00000598553 ETFRF1Q6IPR1 90 aa7.75□□□□□ -1.17
VRK3-214ENST00000598553 CEMP1Q6PRD7 247 aaPredicted RBP7.75□□□□□ -1.17
VRK3-214ENST00000598553 LGI3Q8N145 548 aa7.75□□□□□ -1.17
VRK3-214ENST00000598553 C12orf45Q8N5I9 185 aaPredicted RBP7.75□□□□□ -1.17
VRK3-214ENST00000598553 TMEM217Q8N7C4 229 aa7.75□□□□□ -1.17
VRK3-214ENST00000598553 NARS2Q96I59 477 aaKnown RBP7.75□□□□□ -1.17
VRK3-214ENST00000598553 RARRES2Q99969 163 aa7.75□□□□□ -1.17
VRK3-214ENST00000598553 MAGT1Q9H0U3 335 aa7.75□□□□□ -1.17
VRK3-214ENST00000598553 PIGBOS1A0A0B4J2F0 54 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 PRSS46E5RG02 174 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 BUB3O43684 328 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 LY6G6CO95867 125 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 OR4E1P0C645 316 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 UBE2MP61081 183 aaKnown RBP7.74□□□□□ -1.17
VRK3-214ENST00000598553 OR2F1Q13607 317 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 GAMTQ14353 236 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 ACTL10Q5JWF8 245 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 TMEM182Q6ZP80 229 aaPredicted RBP7.74□□□□□ -1.17
VRK3-214ENST00000598553 Q8NAQ8 132 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 OR1S1Q8NH92 325 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 PHLDA1Q8WV24 401 aaPredicted RBP7.74□□□□□ -1.17
VRK3-214ENST00000598553 GRAMD2BQ96HH9 432 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 C17orf77Q96MU5 243 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 C11orf68Q9H3H3 251 aaKnown RBP7.74□□□□□ -1.17
VRK3-214ENST00000598553 X6R8D5 127 aa7.74□□□□□ -1.17
VRK3-214ENST00000598553 DUXBA0A1W2PPF3 345 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 FAM90A26D6RGX4 464 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 G3V3Q6 166 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 GOSR2O14653 212 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 DEDDO75618 318 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 ADAP1O75689 374 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 SFT2D2O95562 160 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 HOXB5P09067 269 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 VAMP1P23763 118 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 DHRS2Q13268 280 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 TMEM128Q5BJH2 165 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 PSMG4Q5JS54 123 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 STHQ8IWL8 128 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 RPP25LQ8N5L8 163 aaKnown RBP7.73□□□□□ -1.17
VRK3-214ENST00000598553 CSNK1G2-AS1Q8NCQ2 148 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 Q8WTZ3 238 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 SCRT1Q9BWW7 348 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 BIRC6Q9NR09 4857 aa7.73□□□□□ -1.17
VRK3-214ENST00000598553 ELOA3CA0A087WX78 387 aaPredicted RBP7.72□□□□□ -1.17
VRK3-214ENST00000598553 IGHV4-28A0A0C4DH34 117 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 HELTA6NFD8 242 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 H3BP45 60 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 IFNA4P05014 189 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 RD3LP0DJH9 198 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 GATA2P23769 480 aaPredicted RBP7.72□□□□□ -1.17
VRK3-214ENST00000598553 S100A11P31949 105 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 PRR20EP86478 221 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 PRR20CP86479 221 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 PRR20DP86480 221 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 PRR20BP86481 221 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 PRR20AP86496 221 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 GGNBP1Q5YKI7 109 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 LRTM2Q8N967 370 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 RNF125Q96EQ8 232 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 RAB40CQ96S21 281 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 PBDC1Q9BVG4 233 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 FBXL17Q9UF56 701 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 CELA1Q9UNI1 258 aa7.72□□□□□ -1.17
VRK3-214ENST00000598553 A0A0D9SG52 128 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 WRBO00258 174 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 SOCS3O14543 225 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 MPC2O95563 127 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 PRB4P10163 310 aaPredicted RBP7.71□□□□□ -1.18
VRK3-214ENST00000598553 SPP1P10451 314 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 SLC25A6P12236 298 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 CXCL2P19875 107 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 AP2S1P53680 142 aaPredicted RBP7.71□□□□□ -1.18
VRK3-214ENST00000598553 ATP5IP56385 69 aaPredicted RBP7.71□□□□□ -1.18
VRK3-214ENST00000598553 FXYD7P58549 80 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 LYZP61626 148 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 SIGLEC15Q6ZMC9 328 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 TMUB2Q71RG4 321 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 C20orf173Q96LM9 149 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 MED9Q9NWA0 146 aa7.71□□□□□ -1.18
VRK3-214ENST00000598553 KLK5Q9Y337 293 aaPredicted RBP7.71□□□□□ -1.18
VRK3-214ENST00000598553 FXYD6-FXYD2A0A087WZ82 144 aa7.7□□□□□ -1.18
VRK3-214ENST00000598553 C9orf170A2RU37 121 aa7.7□□□□□ -1.18
VRK3-214ENST00000598553 ZFP92A6NM28 416 aa7.7□□□□□ -1.18
VRK3-214ENST00000598553 PMS2P5A8MQ11 134 aa7.7□□□□□ -1.18
VRK3-214ENST00000598553 ZNF705EA8MWA4 302 aaPredicted RBP7.7□□□□□ -1.18
VRK3-214ENST00000598553 F6UB75 175 aa7.7□□□□□ -1.18
VRK3-214ENST00000598553 GPX4P36969 197 aaPredicted RBP7.7□□□□□ -1.18
VRK3-214ENST00000598553 NUP62P37198 522 aaPredicted RBP7.7□□□□□ -1.18
VRK3-214ENST00000598553 H2BFSP57053 126 aa7.7□□□□□ -1.18
VRK3-214ENST00000598553 POLR2GP62487 172 aaKnown RBP eCLIP7.7□□□□□ -1.18
VRK3-214ENST00000598553 CYCSP99999 105 aaKnown RBP7.7□□□□□ -1.18
VRK3-214ENST00000598553 TMEM41BQ5BJD5 291 aa7.7□□□□□ -1.18
VRK3-214ENST00000598553 MORN3Q6PF18 240 aaPredicted RBP7.7□□□□□ -1.18
VRK3-214ENST00000598553 SLC51BQ86UW2 128 aa7.7□□□□□ -1.18
VRK3-214ENST00000598553 C11orf45Q8TAV5 145 aa7.7□□□□□ -1.18
VRK3-214ENST00000598553 MITD1Q8WV92 249 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms