RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 BPIFCQ8NFQ6 507 aa11.87□□□□□ -0.51
TRIM28-213ENST00000598355 FBXL17Q9UF56 701 aa11.87□□□□□ -0.51
TRIM28-213ENST00000598355 LSM5Q9Y4Y9 91 aaKnown RBP11.87□□□□□ -0.51
TRIM28-213ENST00000598355 KMT2CQ8NEZ4 4911 aaKnown RBP11.86□□□□□ -0.51
TRIM28-213ENST00000598355 SOCS3O14543 225 aa11.86□□□□□ -0.51
TRIM28-213ENST00000598355 DEDDO75618 318 aa11.86□□□□□ -0.51
TRIM28-213ENST00000598355 ZNF688P0C7X2 276 aa11.86□□□□□ -0.51
TRIM28-213ENST00000598355 GATA2P23769 480 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-213ENST00000598355 SELENOTP62341 195 aa11.86□□□□□ -0.51
TRIM28-213ENST00000598355 LEMD1Q68G75 181 aa11.86□□□□□ -0.51
TRIM28-213ENST00000598355 NPVFQ9HCQ7 196 aa11.86□□□□□ -0.51
TRIM28-213ENST00000598355 LYRM2Q9NU23 88 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-213ENST00000598355 SMCO3A2RU48 225 aa11.85□□□□□ -0.51
TRIM28-213ENST00000598355 L7N2F9 121 aa11.85□□□□□ -0.51
TRIM28-213ENST00000598355 RPL35AP18077 110 aaKnown RBP11.85□□□□□ -0.51
TRIM28-213ENST00000598355 RRAS2P62070 204 aaPredicted RBP11.85□□□□□ -0.51
TRIM28-213ENST00000598355 VAMP2P63027 116 aa11.85□□□□□ -0.51
TRIM28-213ENST00000598355 DEFB135Q30KP9 77 aa11.85□□□□□ -0.51
TRIM28-213ENST00000598355 TRPT1Q86TN4 253 aaKnown RBP11.85□□□□□ -0.51
TRIM28-213ENST00000598355 RNF183Q96D59 192 aa11.85□□□□□ -0.51
TRIM28-213ENST00000598355 NMES1Q9C002 83 aa11.85□□□□□ -0.51
TRIM28-213ENST00000598355 MGAT4CQ9UBM8 478 aa11.85□□□□□ -0.51
TRIM28-213ENST00000598355 H3BRN7 92 aa11.84□□□□□ -0.51
TRIM28-213ENST00000598355 VWC2Q2TAL6 325 aa11.84□□□□□ -0.51
TRIM28-213ENST00000598355 TEPPQ6URK8 271 aa11.84□□□□□ -0.51
TRIM28-213ENST00000598355 C17orf77Q96MU5 243 aa11.84□□□□□ -0.51
TRIM28-213ENST00000598355 CSTL1Q9H114 145 aa11.84□□□□□ -0.51
TRIM28-213ENST00000598355 STARD9Q9P2P6 4700 aa11.84□□□□□ -0.51
TRIM28-213ENST00000598355 IGSF23A1L1A6 192 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 FAM24AA6NFZ4 105 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 ZNF98A6NK75 572 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 GOSR2O14653 212 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 LINC00869P0C866 280 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 PVALBP20472 110 aaPredicted RBP11.83□□□□□ -0.52
TRIM28-213ENST00000598355 CAV2P51636 162 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 S100A10P60903 97 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 SLC38A11Q08AI6 406 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 CASC10Q5T4H9 136 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 TMEM252Q8N6L7 170 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 SLC25A32Q9H2D1 315 aa11.83□□□□□ -0.52
TRIM28-213ENST00000598355 SPRY2O43597 315 aa11.82□□□□□ -0.52
TRIM28-213ENST00000598355 SIX6O95475 246 aa11.82□□□□□ -0.52
TRIM28-213ENST00000598355 GIG44P09565 113 aaPredicted RBP11.82□□□□□ -0.52
TRIM28-213ENST00000598355 SULT1A1P50225 295 aa11.82□□□□□ -0.52
TRIM28-213ENST00000598355 H2BFSP57053 126 aa11.82□□□□□ -0.52
TRIM28-213ENST00000598355 SNRPD3P62318 126 aaKnown RBP11.82□□□□□ -0.52
TRIM28-213ENST00000598355 PSMG4Q5JS54 123 aa11.82□□□□□ -0.52
TRIM28-213ENST00000598355 ZNF546Q86UE3 836 aa11.82□□□□□ -0.52
TRIM28-213ENST00000598355 GPR82Q96P67 336 aa11.82□□□□□ -0.52
TRIM28-213ENST00000598355 MGST2Q99735 147 aa11.82□□□□□ -0.52
TRIM28-213ENST00000598355 SHANK2-AS3Q9BTD1 123 aa11.82□□□□□ -0.52
TRIM28-213ENST00000598355 TMEM147Q9BVK8 224 aa11.82□□□□□ -0.52
TRIM28-213ENST00000598355 AGPAT2O15120 278 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 CST7O76096 145 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 PTTG1O95997 202 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 ORM2P19652 201 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 S100A7P31151 101 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 PSMB3P49720 205 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 PXDC1Q5TGL8 231 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 SAMD13Q5VXD3 122 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 STHQ8IWL8 128 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 OR8I2Q8N0Y5 310 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 OR1B1Q8NGR6 318 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 GATAD1Q8WUU5 269 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 PPP1R14BQ96C90 147 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 SCRT1Q9BWW7 348 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 SLC25A39Q9BZJ4 359 aaPredicted RBP11.81□□□□□ -0.52
TRIM28-213ENST00000598355 WDR83OSQ9Y284 106 aa11.81□□□□□ -0.52
TRIM28-213ENST00000598355 KNCNA6PVL3 124 aa11.8□□□□□ -0.52
TRIM28-213ENST00000598355 H0YIZ8 118 aa11.8□□□□□ -0.52
TRIM28-213ENST00000598355 ISLRO14498 428 aa11.8□□□□□ -0.52
TRIM28-213ENST00000598355 SPP1P10451 314 aa11.8□□□□□ -0.52
TRIM28-213ENST00000598355 ATF4P18848 351 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-213ENST00000598355 MEOX2P50222 304 aa11.8□□□□□ -0.52
TRIM28-213ENST00000598355 BCAP31P51572 246 aa11.8□□□□□ -0.52
TRIM28-213ENST00000598355 CYCSP99999 105 aaKnown RBP11.8□□□□□ -0.52
TRIM28-213ENST00000598355 PATE2Q6UY27 113 aa11.8□□□□□ -0.52
TRIM28-213ENST00000598355 CHAC2Q8WUX2 184 aa11.8□□□□□ -0.52
TRIM28-213ENST00000598355 UQCC1Q9NVA1 299 aa11.8□□□□□ -0.52
TRIM28-213ENST00000598355 HIGD1AQ9Y241 93 aa11.8□□□□□ -0.52
TRIM28-213ENST00000598355 HYPMO75409 117 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 CA1P00915 261 aaPredicted RBP11.79□□□□□ -0.52
TRIM28-213ENST00000598355 LYL1P12980 280 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 HLA-DRB4P13762 266 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 C4BPBP20851 252 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 S100A11P31949 105 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 GALR1P47211 349 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 RAP2BP61225 183 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 HBG1P69891 147 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 HBG2P69892 147 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 PRR20EP86478 221 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 PRR20CP86479 221 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 PRR20DP86480 221 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 PRR20BP86481 221 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 PRR20AP86496 221 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 TMEM41BQ5BJD5 291 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 MORN3Q6PF18 240 aaPredicted RBP11.79□□□□□ -0.52
TRIM28-213ENST00000598355 STX12Q86Y82 276 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 SLC25A22Q9H936 323 aa11.79□□□□□ -0.52
TRIM28-213ENST00000598355 DOK5Q9P104 306 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms