RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 MED13Q9UHV7 2174 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 COL4A5P29400 1685 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 TCRBV4S1A1TA0A5B7 111 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 CCDC160A6NGH7 325 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 IFNA1P01562 189 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 APOA2P02652 100 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 HLA-EP13747 358 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 MPV17LQ2QL34 196 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 GDF5OSQ5U4N7 250 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 Q8IYB0 196 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 CLECL1Q8IZS7 167 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 OR10K1Q8NGX5 313 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 AP3S1Q92572 193 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 MALSU1Q96EH3 234 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 TP53RKQ96S44 253 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 PBOV1Q9GZY1 135 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 SSR3Q9UNL2 185 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 ZFP30Q9Y2G7 519 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 EIF3AQ14152 1382 aaKnown RBP1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 KDM6AO15550 1401 aaPredicted RBP1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 ALPK2Q86TB3 2170 aa1.04□□□□□ -2.24
SMCHD1-209ENST00000583441 GNG5P63218 68 aa1.03□□□□□ -2.24
SMCHD1-209ENST00000583441 FAM74A1Q5RGS3 127 aa1.03□□□□□ -2.24
SMCHD1-209ENST00000583441 ST6GALNAC3Q8NDV1 305 aa1.03□□□□□ -2.24
SMCHD1-209ENST00000583441 OR13C6PQ8NH95 151 aa1.03□□□□□ -2.24
SMCHD1-209ENST00000583441 MIA2Q96PC5 1412 aa1.03□□□□□ -2.24
SMCHD1-209ENST00000583441 ADGRB2O60241 1585 aa1.03□□□□□ -2.24
SMCHD1-209ENST00000583441 ECM29Q5VYK3 1845 aa1.03□□□□□ -2.25
SMCHD1-209ENST00000583441 INTS1Q8N201 2190 aaKnown RBP1.03□□□□□ -2.25
SMCHD1-209ENST00000583441 RIIAD1A6NNX1 92 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 C17orf112F2Z3M2 114 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 TMEM256-PLSCR3K7ERE1 68 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 BANF1O75531 89 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 IFNA14P01570 189 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 OR10J4P0C629 311 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 NFYBP25208 207 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 DYNLT3P51808 116 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 DSCR4P56555 118 aaPredicted RBP1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 CCDC88AQ3V6T2 1871 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 FLG2Q5D862 2391 aaPredicted RBP1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 TNS3Q68CZ2 1445 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 C4orf22Q6V702 233 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 CDC26Q8NHZ8 85 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 DIDO1Q9BTC0 2240 aaKnown RBP1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 PBDC1Q9BVG4 233 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 CCDC94Q9BW85 323 aaPredicted RBP1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 NPCDR1Q9BY65 106 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 OR2J1Q9GZK6 312 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 ANAPC1Q9H1A4 1944 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 POPDC3Q9HBV1 291 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 CDC42SE1Q9NRR8 79 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 IL20Q9NYY1 176 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 C22orf24Q9Y442 160 aa1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 CHCHD2Q9Y6H1 151 aaPredicted RBP1.02□□□□□ -2.25
SMCHD1-209ENST00000583441 SBF1O95248 1867 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 ZNF106Q9H2Y7 1883 aaKnown RBP1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 E7EUB6 86 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 CCL16O15467 120 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 ROMO1P60602 79 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 IFT20Q8IY31 132 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 NUP35Q8NFH5 326 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 ZNF431Q8TF32 576 aaPredicted RBP1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 PATE1Q8WXA2 126 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 BORCS5Q969J3 196 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 OBSCN-AS1Q96MR7 158 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 LYSMD1Q96S90 227 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 PAIP2Q9BPZ3 127 aaKnown RBP1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 GINS3Q9BRX5 216 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 RP1P56715 2156 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 ARFGEF3Q5TH69 2177 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 MYOFQ9NZM1 2061 aa1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 ARHGEF28Q8N1W1 1705 aaKnown RBP1.01□□□□□ -2.25
SMCHD1-209ENST00000583441 CAMSAP1Q5T5Y3 1602 aa1□□□□□ -2.25
SMCHD1-209ENST00000583441 OGNP20774 298 aaKnown RBP1□□□□□ -2.25
SMCHD1-209ENST00000583441 TCTAP57738 103 aa1□□□□□ -2.25
SMCHD1-209ENST00000583441 EXOC3-AS1Q8N2X6 119 aa1□□□□□ -2.25
SMCHD1-209ENST00000583441 PRRT1Q99946 306 aa1□□□□□ -2.25
SMCHD1-209ENST00000583441 MED29Q9NX70 200 aa1□□□□□ -2.25
SMCHD1-209ENST00000583441 ORMDL1Q9P0S3 153 aa1□□□□□ -2.25
SMCHD1-209ENST00000583441 PCTPQ9UKL6 214 aa1□□□□□ -2.25
SMCHD1-209ENST00000583441 HEATR5BQ9P2D3 2071 aa1□□□□□ -2.25
SMCHD1-209ENST00000583441 UHRF1BP1Q6BDS2 1440 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 KIF1BO60333 1816 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 TRAV10A0A0B4J240 114 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 TRAV5A0A0B4J249 113 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 E5RI56 91 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 NUPR1O60356 82 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 PPP1R2P41236 205 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 LYG2Q86SG7 212 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 OR5D16Q8NGK9 328 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 OR5D14Q8NGL3 314 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 PPTC7Q8NI37 304 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 TMEM14CQ9P0S9 112 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 LAMTOR3Q9UHA4 124 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 TAF1LQ8IZX4 1826 aa0.99□□□□□ -2.25
SMCHD1-209ENST00000583441 MED12LQ86YW9 2145 aa0.98□□□□□ -2.25
SMCHD1-209ENST00000583441 SCN10AQ9Y5Y9 1956 aa0.98□□□□□ -2.25
SMCHD1-209ENST00000583441 A0A087WSZ3 146 aa0.98□□□□□ -2.25
SMCHD1-209ENST00000583441 IGHV1-58A0A0C4DH39 117 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms