RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ZFP30Q9Y2G7 519 aa0.86□□□□□ -2.27
SMCHD1-204ENST00000581226 SNRNP200O75643 2136 aaKnown RBP0.86□□□□□ -2.27
SMCHD1-204ENST00000581226 LAMB4A4D0S4 1761 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 TMEM256-PLSCR3K7ERE1 68 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 M0R2N4 97 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 HYPMO75409 117 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 NCALDP61601 193 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 EIF5AP63241 154 aaKnown RBP0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 KRR1Q13601 381 aaKnown RBP0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 LYRM7Q5U5X0 104 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 C22orf39Q6P5X5 142 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 LYG2Q86SG7 212 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 FAM19A2Q8N3H0 131 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 OR2T10Q8NGZ9 312 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 PHB2Q99623 299 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 IMUPQ9GZP8 106 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 MYLKQ15746 1914 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 FBN2P35556 2912 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 SIP14410 1827 aa0.85□□□□□ -2.27
SMCHD1-204ENST00000581226 EIF3AQ14152 1382 aaKnown RBP0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 A0A087WX48 190 aa0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 TIMM17BO60830 172 aa0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 PRB4P10163 310 aaPredicted RBP0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 SRP14P37108 136 aaKnown RBP0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 INSL3P51460 131 aa0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 GNG5P63218 68 aa0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 TMED2Q15363 201 aa0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 PATE2Q6UY27 113 aa0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 LINC00301Q8NCQ3 95 aa0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 SS18L2Q9UHA2 77 aa0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 ASB4Q9Y574 426 aa0.84□□□□□ -2.27
SMCHD1-204ENST00000581226 E9PCH4 1651 aa0.84□□□□□ -2.28
SMCHD1-204ENST00000581226 ARHGEF11O15085 1522 aa0.84□□□□□ -2.28
SMCHD1-204ENST00000581226 LAMA4Q16363 1823 aa0.83□□□□□ -2.28
SMCHD1-204ENST00000581226 INE1O15225 51 aa0.83□□□□□ -2.28
SMCHD1-204ENST00000581226 NDUFB3O43676 98 aa0.83□□□□□ -2.28
SMCHD1-204ENST00000581226 IGLV1-51P01701 117 aa0.83□□□□□ -2.28
SMCHD1-204ENST00000581226 KRTAP26-1Q6PEX3 210 aa0.83□□□□□ -2.28
SMCHD1-204ENST00000581226 CLECL1Q8IZS7 167 aa0.83□□□□□ -2.28
SMCHD1-204ENST00000581226 OR10K1Q8NGX5 313 aa0.83□□□□□ -2.28
SMCHD1-204ENST00000581226 C14orf132Q9NPU4 83 aa0.83□□□□□ -2.28
SMCHD1-204ENST00000581226 KLK9Q9UKQ9 250 aa0.83□□□□□ -2.28
SMCHD1-204ENST00000581226 PYCARDQ9ULZ3 195 aa0.83□□□□□ -2.28
SMCHD1-204ENST00000581226 TRPM1Q7Z4N2 1603 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 FREM3P0C091 2139 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 CEP164Q9UPV0 1460 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 ZNF736B4DX44 427 aaPredicted RBP0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 TMEM238C9JI98 176 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 MFSD11O43934 449 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 PIAS1O75925 651 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 PROSCO94903 275 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 DHFRP00374 187 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 IFNA7P01567 189 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 CRHP06850 196 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 BASP1P80723 227 aaKnown RBP0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 SPRNQ5BIV9 151 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 Q8N814 137 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 PATE1Q8WXA2 126 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 CEP19Q96LK0 163 aa0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 PHRF1Q9P1Y6 1649 aaKnown RBP0.82□□□□□ -2.28
SMCHD1-204ENST00000581226 COL24A1Q17RW2 1714 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 NOTCH1P46531 2555 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 TRGV10A0A0A0MS01 117 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 TRBV6-7A0A0A0MS04 114 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 PPP1R2P41236 205 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 UBE2BP63146 152 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 PPP1R2P3Q6NXS1 205 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 SMIM20Q8N5G0 67 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 TET1Q8NFU7 2136 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 CANT1Q8WVQ1 401 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 AP3S1Q92572 193 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 HOPXQ9BPY8 73 aaPredicted RBP0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 MRPL57Q9BQC6 102 aaKnown RBP0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 GINS3Q9BRX5 216 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 ACER3Q9NUN7 267 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 PCTPQ9UKL6 214 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 PEAK1Q9H792 1746 aa0.81□□□□□ -2.28
SMCHD1-204ENST00000581226 COL1A1P02452 1464 aaPredicted RBP0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 MGAMO43451 1857 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 CNTRLQ7Z7A1 2325 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 CCDC160A6NGH7 325 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 A8MWV9 139 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 CST8O60676 142 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 ATG12O94817 140 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 ZNF25P17030 456 aaPredicted RBP0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 DYNLT3P51808 116 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 GNG3P63215 75 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 C1orf134Q5TEV5 83 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 TEX261Q6UWH6 196 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 TEX47Q8TBZ9 253 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 TEX37Q96LM6 180 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 CARD19Q96LW7 228 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 PAIP2Q9BPZ3 127 aaKnown RBP0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 SLC25A21Q9BQT8 299 aaPredicted RBP0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 C6orf62Q9GZU0 229 aaPredicted RBP0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 CDC42SE1Q9NRR8 79 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 U3KQ87 197 aa0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 ZNF469Q96JG9 3925 aaPredicted RBP0.8□□□□□ -2.28
SMCHD1-204ENST00000581226 CITO14578 2027 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 FRMPD1Q5SYB0 1578 aa0.79□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms