RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 NEURL2Q9BR09 285 aa6.47□□□□□ -1.37
NUP88-211ENST00000575976 VSIRQ9H7M9 311 aa6.47□□□□□ -1.37
NUP88-211ENST00000575976 DOK5Q9P104 306 aa6.47□□□□□ -1.37
NUP88-211ENST00000575976 A0A1W2PS18 150 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 IZUMO1RA6ND01 250 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 C1QBP02746 253 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 OR5G3P0C626 314 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 EIF2B2P49770 351 aaKnown RBP6.46□□□□□ -1.38
NUP88-211ENST00000575976 PLP1P60201 277 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 KRTAP10-11P60412 298 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 EGFEM1PQ0D2K5 195 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 BEAN1Q3B7T3 259 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 PATE2Q6UY27 113 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 KCNRGQ8N5I3 272 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 RNF2Q99496 336 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 RSG1Q9BU20 258 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 NPCDR1Q9BY65 106 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 PARD6GQ9BYG4 376 aaPredicted RBP6.46□□□□□ -1.38
NUP88-211ENST00000575976 ARL6Q9H0F7 186 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 SLC39A9Q9NUM3 307 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 TECRQ9NZ01 308 aaKnown RBP6.46□□□□□ -1.38
NUP88-211ENST00000575976 RFNGQ9Y644 331 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 PXMP4Q9Y6I8 212 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 RYR3Q15413 4870 aa6.46□□□□□ -1.38
NUP88-211ENST00000575976 BUB3O43684 328 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 HYPMO75409 117 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 BMI1P35226 326 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 B2MP61769 119 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 ZNF266Q14584 549 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 KPRPQ5T749 579 aaPredicted RBP6.45□□□□□ -1.38
NUP88-211ENST00000575976 FAM90A2PQ658T7 463 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 RPL7L1Q6DKI1 246 aaKnown RBP6.45□□□□□ -1.38
NUP88-211ENST00000575976 C16orf54Q6UWD8 224 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 Q6ZRG5 221 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 TCF24Q7RTU0 167 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 TMEM61Q8N0U2 210 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 ZNF709Q8N972 641 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 OR2K2Q8NGT1 345 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 TMEM37Q8WXS4 190 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 PPP1R14BQ96C90 147 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 NARS2Q96I59 477 aaKnown RBP6.45□□□□□ -1.38
NUP88-211ENST00000575976 UHRF2Q96PU4 802 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 ARV1Q9H2C2 271 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 TMEM231Q9H6L2 316 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 CYTL1Q9NRR1 136 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 HIGD1AQ9Y241 93 aa6.45□□□□□ -1.38
NUP88-211ENST00000575976 VWFP04275 2813 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 IGKV3-7A0A075B6H7 116 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 TRAV25A0A0B4J276 109 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 A0A0D9SG52 128 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 ZNF98A6NK75 572 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 ZNF785A8K8V0 405 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 C17orf112F2Z3M2 114 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 H3BRN7 92 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 TAAR5O14804 337 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 COX7A2P2O60397 106 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 ATP6V0CP27449 155 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 ZNF345Q14585 488 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 LGALSLQ3ZCW2 172 aaPredicted RBP6.44□□□□□ -1.38
NUP88-211ENST00000575976 GCSAMLQ5JQS6 135 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 PXDC1Q5TGL8 231 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 LAMTOR1Q6IAA8 161 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 LCN12Q6JVE5 192 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 RBPMS2Q6ZRY4 209 aaKnown RBP6.44□□□□□ -1.38
NUP88-211ENST00000575976 HSD17B11Q8NBQ5 300 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 GLMPQ8WWB7 406 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 GRAMD2BQ96HH9 432 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 HYLS1Q96M11 299 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 SCRT1Q9BWW7 348 aa6.44□□□□□ -1.38
NUP88-211ENST00000575976 SLC25A39Q9BZJ4 359 aaPredicted RBP6.44□□□□□ -1.38
NUP88-211ENST00000575976 ZNF256Q9Y2P7 627 aaPredicted RBP6.44□□□□□ -1.38
NUP88-211ENST00000575976 ELOA3CA0A087WX78 387 aaPredicted RBP6.43□□□□□ -1.38
NUP88-211ENST00000575976 BORCS7-ASMTA0A0B4J1R7 106 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 TMEM238LA0A1B0GVL6 79 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 TSPAN4O14817 238 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 PRB2P02812 416 aaPredicted RBP6.43□□□□□ -1.38
NUP88-211ENST00000575976 GP9P14770 177 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 RPL11P62913 178 aaKnown RBP6.43□□□□□ -1.38
NUP88-211ENST00000575976 GUCA2BQ16661 112 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 ZFP69Q49AA0 526 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 FFAR4Q5NUL3 377 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 C1orf194Q5T5A4 169 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 MORN5Q5VZ52 161 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 C10orf113Q5VZT2 155 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 LEMD1Q68G75 181 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 TMUB2Q71RG4 321 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 LINC00305Q7Z4B0 112 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 GBGT1Q8N5D6 347 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 OR1L4Q8NGR5 311 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 PRR25Q96S07 402 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 SHANK2-AS3Q9BTD1 123 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 SLC25A32Q9H2D1 315 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 SLC25A22Q9H936 323 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 DNAJC4Q9NNZ3 241 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 KCNIP2Q9NS61 270 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 ZMAT5Q9UDW3 170 aaKnown RBP6.43□□□□□ -1.38
NUP88-211ENST00000575976 PFDN2Q9UHV9 154 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 TIMM9Q9Y5J7 89 aa6.43□□□□□ -1.38
NUP88-211ENST00000575976 KANTRA0A1W2PQU2 76 aa6.42□□□□□ -1.38
NUP88-211ENST00000575976 A6NJY4 79 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms