RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 BEST4Q8NFU0 473 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 PBDC1Q9BVG4 233 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 MED4Q9NPJ6 270 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 MORN5Q5VZ52 161 aa10.53□□□□□ -0.72
VPS53-218ENST00000575207 OR8G2PQ6IF36 304 aa10.53□□□□□ -0.72
VPS53-218ENST00000575207 OR52E5Q8NH55 327 aa10.53□□□□□ -0.72
VPS53-218ENST00000575207 CCDC90BQ9GZT6 254 aa10.53□□□□□ -0.72
VPS53-218ENST00000575207 PSG1P11464 419 aa10.52□□□□□ -0.73
VPS53-218ENST00000575207 HERV-K104P61576 105 aa10.52□□□□□ -0.73
VPS53-218ENST00000575207 TMEM91Q6ZNR0 172 aa10.52□□□□□ -0.73
VPS53-218ENST00000575207 SLC25A4P12235 298 aa10.51□□□□□ -0.73
VPS53-218ENST00000575207 KRTAP10-8P60410 259 aa10.51□□□□□ -0.73
VPS53-218ENST00000575207 RHOBP62745 196 aa10.51□□□□□ -0.73
VPS53-218ENST00000575207 OR8I2Q8N0Y5 310 aa10.51□□□□□ -0.73
VPS53-218ENST00000575207 HSD17B11Q8NBQ5 300 aa10.51□□□□□ -0.73
VPS53-218ENST00000575207 PPP1R14DQ9NXH3 145 aa10.51□□□□□ -0.73
VPS53-218ENST00000575207 LECT2O14960 151 aa10.5□□□□□ -0.73
VPS53-218ENST00000575207 CDKN1BP46527 198 aa10.5□□□□□ -0.73
VPS53-218ENST00000575207 DAZ2Q13117 558 aaKnown RBP10.5□□□□□ -0.73
VPS53-218ENST00000575207 C1orf146Q5VVC0 180 aa10.5□□□□□ -0.73
VPS53-218ENST00000575207 RBFOX3A6NFN3 312 aa10.49□□□□□ -0.73
VPS53-218ENST00000575207 IGKV1-39P01597 117 aa10.49□□□□□ -0.73
VPS53-218ENST00000575207 IGKV1D-39P04432 117 aa10.49□□□□□ -0.73
VPS53-218ENST00000575207 CBX5P45973 191 aa10.49□□□□□ -0.73
VPS53-218ENST00000575207 ZNF415Q09FC8 603 aa10.49□□□□□ -0.73
VPS53-218ENST00000575207 IZUMO4Q1ZYL8 232 aa10.49□□□□□ -0.73
VPS53-218ENST00000575207 BSXQ3C1V8 233 aa10.49□□□□□ -0.73
VPS53-218ENST00000575207 IDNKQ5T6J7 187 aa10.49□□□□□ -0.73
VPS53-218ENST00000575207 MRGPRFQ96AM1 343 aa10.49□□□□□ -0.73
VPS53-218ENST00000575207 PRO0255Q9UI72 69 aa10.49□□□□□ -0.73
VPS53-218ENST00000575207 A0A0J9YXV3 536 aa10.48□□□□□ -0.73
VPS53-218ENST00000575207 CASQ2O14958 399 aaPredicted RBP10.48□□□□□ -0.73
VPS53-218ENST00000575207 OR5AC1P0C628 307 aa10.48□□□□□ -0.73
VPS53-218ENST00000575207 ZNF555Q8NEP9 628 aa10.48□□□□□ -0.73
VPS53-218ENST00000575207 NPIPB3Q92617 1050 aa10.48□□□□□ -0.73
VPS53-218ENST00000575207 C20orf144Q9BQM9 153 aa10.48□□□□□ -0.73
VPS53-218ENST00000575207 TM2D2Q9BX73 214 aa10.48□□□□□ -0.73
VPS53-218ENST00000575207 ENY2Q9NPA8 101 aa10.48□□□□□ -0.73
VPS53-218ENST00000575207 IFITM5A6NNB3 132 aa10.47□□□□□ -0.73
VPS53-218ENST00000575207 PRAF2O60831 178 aa10.47□□□□□ -0.73
VPS53-218ENST00000575207 NXPH3O95157 252 aa10.47□□□□□ -0.73
VPS53-218ENST00000575207 HIST1H1AQ02539 215 aaPredicted RBP10.47□□□□□ -0.73
VPS53-218ENST00000575207 LINC01556Q5JQF7 62 aa10.47□□□□□ -0.73
VPS53-218ENST00000575207 AHSA2Q719I0 299 aa10.47□□□□□ -0.73
VPS53-218ENST00000575207 HOGA1Q86XE5 327 aa10.47□□□□□ -0.73
VPS53-218ENST00000575207 PPP1R14BQ96C90 147 aa10.47□□□□□ -0.73
VPS53-218ENST00000575207 PDCD10Q9BUL8 212 aa10.47□□□□□ -0.73
VPS53-218ENST00000575207 FUT9Q9Y231 359 aa10.47□□□□□ -0.73
VPS53-218ENST00000575207 IGHV3-38A0A0C4DH36 116 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 GYPEP15421 78 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 SRIP30626 198 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 TNFSF8P32971 234 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 GALR1P47211 349 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 CRYBA4P53673 196 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 PSG3Q16557 428 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 IGFL4Q6B9Z1 124 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 RNF182Q8N6D2 247 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 PYDC1Q8WXC3 89 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 RRNAD1Q96FB5 475 aaKnown RBP10.46□□□□□ -0.73
VPS53-218ENST00000575207 ACY3Q96HD9 319 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 RSG1Q9BU20 258 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 MND1Q9BWT6 205 aa10.46□□□□□ -0.73
VPS53-218ENST00000575207 GPR31O00270 319 aa10.45□□□□□ -0.74
VPS53-218ENST00000575207 CCNKO75909 580 aa10.45□□□□□ -0.74
VPS53-218ENST00000575207 HSMCR30P0CW71 290 aa10.45□□□□□ -0.74
VPS53-218ENST00000575207 HTR2BP41595 481 aa10.45□□□□□ -0.74
VPS53-218ENST00000575207 SLAQ13239 276 aa10.45□□□□□ -0.74
VPS53-218ENST00000575207 ZNF738Q8NE65 137 aa10.45□□□□□ -0.74
VPS53-218ENST00000575207 UFD1Q92890 307 aa10.45□□□□□ -0.74
VPS53-218ENST00000575207 HHLA3Q9XRX5 114 aa10.45□□□□□ -0.74
VPS53-218ENST00000575207 RRP15Q9Y3B9 282 aaKnown RBP10.45□□□□□ -0.74
VPS53-218ENST00000575207 SPHARQ15513 63 aa10.44□□□□□ -0.74
VPS53-218ENST00000575207 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.44□□□□□ -0.74
VPS53-218ENST00000575207 OR5AP2Q8NGF4 316 aa10.44□□□□□ -0.74
VPS53-218ENST00000575207 RNASEH2CQ8TDP1 164 aaKnown RBP10.44□□□□□ -0.74
VPS53-218ENST00000575207 C8orf49Q96NF6 230 aa10.44□□□□□ -0.74
VPS53-218ENST00000575207 C9orf16Q9BUW7 83 aa10.44□□□□□ -0.74
VPS53-218ENST00000575207 PSORS1C1Q9UIG5 152 aa10.44□□□□□ -0.74
VPS53-218ENST00000575207 TRGV1A0A0A0MS02 117 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 TRAV8-2A0A0B4J237 113 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 PANO1I0J062 215 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 PDCD5O14737 125 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 SCGNO76038 276 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 LYZP61626 148 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 GNGT1P63211 74 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 OR2F1Q13607 317 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 TRAM1Q15629 374 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 ETFRF1Q6IPR1 90 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 OR8A1Q8NGG7 326 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 IL22RA2Q969J5 263 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 ST6GAL2Q96JF0 529 aa10.43□□□□□ -0.74
VPS53-218ENST00000575207 K7EQD1 137 aa10.42□□□□□ -0.74
VPS53-218ENST00000575207 IGHV3-53P01767 116 aa10.42□□□□□ -0.74
VPS53-218ENST00000575207 SCAND1P57086 179 aa10.42□□□□□ -0.74
VPS53-218ENST00000575207 PHLDA2Q53GA4 152 aa10.42□□□□□ -0.74
VPS53-218ENST00000575207 C9orf47Q6ZRZ4 202 aa10.42□□□□□ -0.74
VPS53-218ENST00000575207 SPARTQ8N0X7 666 aa10.42□□□□□ -0.74
VPS53-218ENST00000575207 CCDC197Q8NCU1 140 aa10.42□□□□□ -0.74
VPS53-218ENST00000575207 ZNF2Q9BSG1 426 aaPredicted RBP10.42□□□□□ -0.74
VPS53-218ENST00000575207 SLC25A32Q9H2D1 315 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms