RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 TCTAP57738 103 aa12.98□□□□□ -0.33
CHD3-214ENST00000572579 C1orf194Q5T5A4 169 aa12.98□□□□□ -0.33
CHD3-214ENST00000572579 GGNBP1Q5YKI7 109 aa12.98□□□□□ -0.33
CHD3-214ENST00000572579 SLC25A21Q9BQT8 299 aaPredicted RBP12.98□□□□□ -0.33
CHD3-214ENST00000572579 IGHV4-4A0A075B6R2 117 aa12.97□□□□□ -0.33
CHD3-214ENST00000572579 TRAV10A0A0B4J240 114 aa12.97□□□□□ -0.33
CHD3-214ENST00000572579 FAUP35544 74 aaKnown RBP12.97□□□□□ -0.33
CHD3-214ENST00000572579 AP3S2P59780 193 aa12.97□□□□□ -0.33
CHD3-214ENST00000572579 BAK1Q16611 211 aa12.97□□□□□ -0.33
CHD3-214ENST00000572579 SRRQ9GZT4 340 aa12.97□□□□□ -0.33
CHD3-214ENST00000572579 TMED3Q9Y3Q3 217 aa12.97□□□□□ -0.33
CHD3-214ENST00000572579 WRBO00258 174 aa12.96□□□□□ -0.33
CHD3-214ENST00000572579 SYNGR2O43760 224 aa12.96□□□□□ -0.33
CHD3-214ENST00000572579 ADAP1O75689 374 aa12.96□□□□□ -0.33
CHD3-214ENST00000572579 FOXI2Q6ZQN5 318 aa12.96□□□□□ -0.33
CHD3-214ENST00000572579 SDHCQ99643 169 aaPredicted RBP12.96□□□□□ -0.33
CHD3-214ENST00000572579 SLC35B3Q9H1N7 401 aa12.96□□□□□ -0.33
CHD3-214ENST00000572579 PLA2G2EQ9NZK7 142 aa12.96□□□□□ -0.33
CHD3-214ENST00000572579 PAIP2BQ9ULR5 123 aaKnown RBP12.96□□□□□ -0.33
CHD3-214ENST00000572579 FLVCR2Q9UPI3 526 aa12.96□□□□□ -0.33
CHD3-214ENST00000572579 PSMB3P49720 205 aa12.95□□□□□ -0.34
CHD3-214ENST00000572579 NUTF2P61970 127 aaKnown RBP12.95□□□□□ -0.34
CHD3-214ENST00000572579 RAB11AP62491 216 aa12.95□□□□□ -0.34
CHD3-214ENST00000572579 ID3Q02535 119 aa12.95□□□□□ -0.34
CHD3-214ENST00000572579 C1orf158Q8N1D5 194 aa12.95□□□□□ -0.34
CHD3-214ENST00000572579 CLUHP3Q96NS8 147 aa12.95□□□□□ -0.34
CHD3-214ENST00000572579 NEU1Q99519 415 aa12.95□□□□□ -0.34
CHD3-214ENST00000572579 C1QTNF4Q9BXJ3 329 aa12.95□□□□□ -0.34
CHD3-214ENST00000572579 KRTAP17-1Q9BYP8 105 aa12.95□□□□□ -0.34
CHD3-214ENST00000572579 SLC25A32Q9H2D1 315 aa12.95□□□□□ -0.34
CHD3-214ENST00000572579 DYNC1H1Q14204 4646 aaKnown RBP12.94□□□□□ -0.34
CHD3-214ENST00000572579 PKHD1P08F94 4074 aa12.94□□□□□ -0.34
CHD3-214ENST00000572579 DEFB131BA0A096LNP1 70 aa12.94□□□□□ -0.34
CHD3-214ENST00000572579 C9orf170A2RU37 121 aa12.94□□□□□ -0.34
CHD3-214ENST00000572579 PMS2P5A8MQ11 134 aa12.94□□□□□ -0.34
CHD3-214ENST00000572579 H3BP45 60 aa12.94□□□□□ -0.34
CHD3-214ENST00000572579 SPANXN5Q5MJ07 72 aa12.94□□□□□ -0.34
CHD3-214ENST00000572579 OR8I2Q8N0Y5 310 aa12.94□□□□□ -0.34
CHD3-214ENST00000572579 CENPSQ8N2Z9 138 aa12.94□□□□□ -0.34
CHD3-214ENST00000572579 RNF126Q9BV68 326 aa12.94□□□□□ -0.34
CHD3-214ENST00000572579 A0A0J9YX75 114 aa12.93□□□□□ -0.34
CHD3-214ENST00000572579 ZNF98A6NK75 572 aa12.93□□□□□ -0.34
CHD3-214ENST00000572579 MED6O75586 246 aa12.93□□□□□ -0.34
CHD3-214ENST00000572579 NUP62P37198 522 aaPredicted RBP12.93□□□□□ -0.34
CHD3-214ENST00000572579 PAX9P55771 341 aa12.93□□□□□ -0.34
CHD3-214ENST00000572579 POLR2GP62487 172 aaKnown RBP eCLIP12.93□□□□□ -0.34
CHD3-214ENST00000572579 FAM78BQ5VT40 261 aa12.93□□□□□ -0.34
CHD3-214ENST00000572579 IGFL4Q6B9Z1 124 aa12.93□□□□□ -0.34
CHD3-214ENST00000572579 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.93□□□□□ -0.34
CHD3-214ENST00000572579 OR4B1Q8NGF8 309 aa12.93□□□□□ -0.34
CHD3-214ENST00000572579 DEDD2Q8WXF8 326 aa12.93□□□□□ -0.34
CHD3-214ENST00000572579 RSG1Q9BU20 258 aa12.93□□□□□ -0.34
CHD3-214ENST00000572579 TRAV8-2A0A0B4J237 113 aa12.92□□□□□ -0.34
CHD3-214ENST00000572579 CCDC160A6NGH7 325 aa12.92□□□□□ -0.34
CHD3-214ENST00000572579 ISLRO14498 428 aa12.92□□□□□ -0.34
CHD3-214ENST00000572579 CCNKO75909 580 aa12.92□□□□□ -0.34
CHD3-214ENST00000572579 PRM2P04554 102 aa12.92□□□□□ -0.34
CHD3-214ENST00000572579 FABP1P07148 127 aa12.92□□□□□ -0.34
CHD3-214ENST00000572579 BTCP35070 178 aa12.92□□□□□ -0.34
CHD3-214ENST00000572579 ID1P41134 155 aa12.92□□□□□ -0.34
CHD3-214ENST00000572579 EMP1P54849 157 aa12.92□□□□□ -0.34
CHD3-214ENST00000572579 AMTNQ6UX39 209 aa12.92□□□□□ -0.34
CHD3-214ENST00000572579 CIB3Q96Q77 187 aaPredicted RBP12.92□□□□□ -0.34
CHD3-214ENST00000572579 IGHV3OR16-12A0A075B7B8 117 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 PIGBOS1A0A0B4J2F0 54 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 A8MTW9 85 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 NDUFB6O95139 128 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 AMBPP02760 352 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 ORM2P19652 201 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 S100A5P33763 92 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 ACOT7LQ6ZUV0 252 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 OR4D5Q8NGN0 318 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 PPP1R14BQ96C90 147 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 SLC25A22Q9H936 323 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 PFDN2Q9UHV9 154 aa12.91□□□□□ -0.34
CHD3-214ENST00000572579 PSG9Q00887 426 aa12.9□□□□□ -0.34
CHD3-214ENST00000572579 TMEM144Q7Z5S9 345 aa12.9□□□□□ -0.34
CHD3-214ENST00000572579 COQ8AQ8NI60 647 aa12.9□□□□□ -0.34
CHD3-214ENST00000572579 DKK2Q9UBU2 259 aa12.9□□□□□ -0.34
CHD3-214ENST00000572579 DNAH11Q96DT5 4516 aa12.89□□□□□ -0.35
CHD3-214ENST00000572579 LINC00854A0A1B0GVQ3 168 aa12.89□□□□□ -0.35
CHD3-214ENST00000572579 SMIM9A6NGZ8 99 aa12.89□□□□□ -0.35
CHD3-214ENST00000572579 SPART-AS1P0CW21 52 aa12.89□□□□□ -0.35
CHD3-214ENST00000572579 UBE2MP61081 183 aaKnown RBP12.89□□□□□ -0.35
CHD3-214ENST00000572579 RPP30P78346 268 aaKnown RBP12.89□□□□□ -0.35
CHD3-214ENST00000572579 C16orf92Q96LL3 132 aa12.89□□□□□ -0.35
CHD3-214ENST00000572579 SLC45A2Q9UMX9 530 aa12.89□□□□□ -0.35
CHD3-214ENST00000572579 STRAPQ9Y3F4 350 aaKnown RBP12.89□□□□□ -0.35
CHD3-214ENST00000572579 PCLOQ9Y6V0 5065 aa12.88□□□□□ -0.35
CHD3-214ENST00000572579 PKD1P98161 4303 aa12.88□□□□□ -0.35
CHD3-214ENST00000572579 CFDP00746 253 aaPredicted RBP12.88□□□□□ -0.35
CHD3-214ENST00000572579 OR4E1P0C645 316 aa12.88□□□□□ -0.35
CHD3-214ENST00000572579 ANXA7P20073 488 aaKnown RBP12.88□□□□□ -0.35
CHD3-214ENST00000572579 FAM222AQ5U5X8 452 aa12.88□□□□□ -0.35
CHD3-214ENST00000572579 SPATA31B1PQ5VZV4 182 aa12.88□□□□□ -0.35
CHD3-214ENST00000572579 OR1B1Q8NGR6 318 aa12.88□□□□□ -0.35
CHD3-214ENST00000572579 DOK5Q9P104 306 aa12.88□□□□□ -0.35
CHD3-214ENST00000572579 RFNGQ9Y644 331 aa12.88□□□□□ -0.35
CHD3-214ENST00000572579 H3BRN7 92 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 ZNF701M0R085 212 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms