RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	RPL29	P47914	159 aa	Known RBP	13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034	RAB31	Q13636	194 aa		13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034	PATE2	Q6UY27	113 aa		13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034	AKAP14	Q86UN6	197 aa		13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034	OR1B1	Q8NGR6	318 aa		13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034	GLMP	Q8WWB7	406 aa		13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034	PARD6G	Q9BYG4	376 aa	Predicted RBP	13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034	DOK5	Q9P104	306 aa		13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034		A0A1W2PS18	150 aa		13.52	□□□□□ -0.25
COMMD4-222	ENST00000568034	AP2S1	P53680	142 aa	Predicted RBP	13.52	□□□□□ -0.25
COMMD4-222	ENST00000568034	LCN12	Q6JVE5	192 aa		13.52	□□□□□ -0.25
COMMD4-222	ENST00000568034	C16orf54	Q6UWD8	224 aa		13.52	□□□□□ -0.25
COMMD4-222	ENST00000568034	NEURL2	Q9BR09	285 aa		13.52	□□□□□ -0.25
COMMD4-222	ENST00000568034	PXMP4	Q9Y6I8	212 aa		13.52	□□□□□ -0.25
COMMD4-222	ENST00000568034	TRAV25	A0A0B4J276	109 aa		13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	PRB2	P02812	416 aa	Predicted RBP	13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	GP9	P14770	177 aa		13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	BMI1	P35226	326 aa		13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	B2M	P61769	119 aa		13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	TMEM37	Q8WXS4	190 aa		13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	RSG1	Q9BU20	258 aa		13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	MFF	Q9GZY8	342 aa		13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	ARL6	Q9H0F7	186 aa		13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	TMEM231	Q9H6L2	316 aa		13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	SLC39A9	Q9NUM3	307 aa		13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034	ZNF256	Q9Y2P7	627 aa	Predicted RBP	13.51	□□□□□ -0.25
COMMD4-222	ENST00000568034		H3BRN7	92 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	TSPAN4	O14817	238 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	HYPM	O75409	117 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	IFNA5	P01569	189 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	CXCL2	P19875	107 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	ZNF345	Q14585	488 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	PXDC1	Q5TGL8	231 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	TCF24	Q7RTU0	167 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	NARS2	Q96I59	477 aa	Known RBP	13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	UHRF2	Q96PU4	802 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	PRR25	Q96S07	402 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	ARV1	Q9H2C2	271 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	RFNG	Q9Y644	331 aa		13.5	□□□□□ -0.25
COMMD4-222	ENST00000568034	C1QB	P02746	253 aa		13.49	□□□□□ -0.25
COMMD4-222	ENST00000568034	ZNF266	Q14584	549 aa		13.49	□□□□□ -0.25
COMMD4-222	ENST00000568034	GCSAML	Q5JQS6	135 aa		13.49	□□□□□ -0.25
COMMD4-222	ENST00000568034	RPL7L1	Q6DKI1	246 aa	Known RBP	13.49	□□□□□ -0.25
COMMD4-222	ENST00000568034	KCNRG	Q8N5I3	272 aa		13.49	□□□□□ -0.25
COMMD4-222	ENST00000568034	SHANK2-AS3	Q9BTD1	123 aa		13.49	□□□□□ -0.25
COMMD4-222	ENST00000568034	SCRT1	Q9BWW7	348 aa		13.49	□□□□□ -0.25
COMMD4-222	ENST00000568034	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	13.49	□□□□□ -0.25
COMMD4-222	ENST00000568034	CYTL1	Q9NRR1	136 aa		13.49	□□□□□ -0.25
COMMD4-222	ENST00000568034	HIGD1A	Q9Y241	93 aa		13.49	□□□□□ -0.25
COMMD4-222	ENST00000568034	ZNF98	A6NK75	572 aa		13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	OR5G3	P0C626	314 aa		13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	C1orf194	Q5T5A4	169 aa		13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	MORN5	Q5VZ52	161 aa		13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	LAMTOR1	Q6IAA8	161 aa		13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	RBPMS2	Q6ZRY4	209 aa	Known RBP	13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	SCGB1C1	Q8TD33	95 aa		13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	GRAMD2B	Q96HH9	432 aa		13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	SPAG8	Q99932	426 aa	Predicted RBP	13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	ZMAT5	Q9UDW3	170 aa	Known RBP	13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	PRKDC	P78527	4128 aa	Known RBP	13.48	□□□□□ -0.25
COMMD4-222	ENST00000568034	GUCA2B	Q16661	112 aa		13.47	□□□□□ -0.25
COMMD4-222	ENST00000568034	LEMD1	Q68G75	181 aa		13.47	□□□□□ -0.25
COMMD4-222	ENST00000568034		Q6ZRG5	221 aa		13.47	□□□□□ -0.25
COMMD4-222	ENST00000568034	PPP1R14B	Q96C90	147 aa		13.47	□□□□□ -0.25
COMMD4-222	ENST00000568034	SLC25A32	Q9H2D1	315 aa		13.47	□□□□□ -0.25
COMMD4-222	ENST00000568034	KCNIP2	Q9NS61	270 aa		13.47	□□□□□ -0.25
COMMD4-222	ENST00000568034	IGKV3-7	A0A075B6H7	116 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	ELOA3C	A0A087WX78	387 aa	Predicted RBP	13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	C17orf112	F2Z3M2	114 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034		K7EIL1	84 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	COX7A2P2	O60397	106 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	CD5	P06127	495 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034		Q8N1Y9	231 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	ZNF709	Q8N972	641 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	OR1L4	Q8NGR5	311 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	C17orf77	Q96MU5	243 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	DNAJC4	Q9NNZ3	241 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	PFDN2	Q9UHV9	154 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	TIMM9	Q9Y5J7	89 aa		13.46	□□□□□ -0.25
COMMD4-222	ENST00000568034	HELT	A6NFD8	242 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	TAAR5	O14804	337 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	CD7	P09564	240 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	ATP6V0C	P27449	155 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	DEFA6	Q01524	100 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	C10orf113	Q5VZT2	155 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	SIGLEC15	Q6ZMC9	328 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	LINC00305	Q7Z4B0	112 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	GBGT1	Q8N5D6	347 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	HSD17B11	Q8NBQ5	300 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	MS4A6A	Q9H2W1	248 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	SLC25A22	Q9H936	323 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	C19orf73	Q9NVV2	129 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	SMAD5-AS1	Q9Y6J3	95 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034	MEGF8	Q7Z7M0	2845 aa		13.45	□□□□□ -0.26
COMMD4-222	ENST00000568034		A0A0D9SG52	128 aa		13.44	□□□□□ -0.26
COMMD4-222	ENST00000568034	MRPS12	O15235	138 aa	Known RBP	13.44	□□□□□ -0.26
COMMD4-222	ENST00000568034	LGALSL	Q3ZCW2	172 aa	Predicted RBP	13.44	□□□□□ -0.26
COMMD4-222	ENST00000568034	FFAR4	Q5NUL3	377 aa		13.44	□□□□□ -0.26
COMMD4-222	ENST00000568034	OR8I2	Q8N0Y5	310 aa		13.44	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms