RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 PFDN5Q99471 154 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 SIGLEC8Q9NYZ4 499 aa15.71■□□□□ 0.11
CLN3-212ENST00000564574 ELOA3CA0A087WX78 387 aaPredicted RBP15.7■□□□□ 0.1
CLN3-212ENST00000564574 IGHV7-4-1A0A0J9YVY3 117 aa15.7■□□□□ 0.1
CLN3-212ENST00000564574 C8orf88P0DMB2 117 aa15.7■□□□□ 0.1
CLN3-212ENST00000564574 CD33P20138 364 aa15.7■□□□□ 0.1
CLN3-212ENST00000564574 BMI1P35226 326 aa15.7■□□□□ 0.1
CLN3-212ENST00000564574 SERF2P84101 59 aa15.7■□□□□ 0.1
CLN3-212ENST00000564574 TM4SF20Q53R12 229 aa15.7■□□□□ 0.1
CLN3-212ENST00000564574 BAP18Q8IXM2 172 aa15.7■□□□□ 0.1
CLN3-212ENST00000564574 MCRIP2Q9BUT9 160 aaKnown RBP15.7■□□□□ 0.1
CLN3-212ENST00000564574 HIGD1AQ9Y241 93 aa15.7■□□□□ 0.1
CLN3-212ENST00000564574 A0A1W2PS18 150 aa15.69■□□□□ 0.1
CLN3-212ENST00000564574 ZNF207O43670 478 aaKnown RBP15.69■□□□□ 0.1
CLN3-212ENST00000564574 COX7A2P2O60397 106 aa15.69■□□□□ 0.1
CLN3-212ENST00000564574 CSN3P07498 182 aa15.69■□□□□ 0.1
CLN3-212ENST00000564574 FFAR4Q5NUL3 377 aa15.69■□□□□ 0.1
CLN3-212ENST00000564574 IL34Q6ZMJ4 242 aa15.69■□□□□ 0.1
CLN3-212ENST00000564574 GATAD1Q8WUU5 269 aa15.69■□□□□ 0.1
CLN3-212ENST00000564574 TMEM231Q9H6L2 316 aa15.69■□□□□ 0.1
CLN3-212ENST00000564574 U3KQE9 123 aa15.69■□□□□ 0.1
CLN3-212ENST00000564574 OR5G3P0C626 314 aa15.68■□□□□ 0.1
CLN3-212ENST00000564574 SPP1P10451 314 aa15.68■□□□□ 0.1
CLN3-212ENST00000564574 CBLN1P23435 193 aa15.68■□□□□ 0.1
CLN3-212ENST00000564574 ACOT6Q3I5F7 207 aaPredicted RBP15.68■□□□□ 0.1
CLN3-212ENST00000564574 C10orf113Q5VZT2 155 aa15.68■□□□□ 0.1
CLN3-212ENST00000564574 DNAJC4Q9NNZ3 241 aa15.68■□□□□ 0.1
CLN3-212ENST00000564574 DOK5Q9P104 306 aa15.68■□□□□ 0.1
CLN3-212ENST00000564574 SMPXQ9UHP9 88 aa15.68■□□□□ 0.1
CLN3-212ENST00000564574 RNF24Q9Y225 148 aa15.68■□□□□ 0.1
CLN3-212ENST00000564574 MBP02144 154 aa15.67■□□□□ 0.1
CLN3-212ENST00000564574 SEC11BP0C7V7 166 aa15.67■□□□□ 0.1
CLN3-212ENST00000564574 FOLR2P14207 255 aa15.67■□□□□ 0.1
CLN3-212ENST00000564574 PRR31Q5SQ13 230 aa15.67■□□□□ 0.1
CLN3-212ENST00000564574 PATE2Q6UY27 113 aa15.67■□□□□ 0.1
CLN3-212ENST00000564574 GRAMD2BQ96HH9 432 aa15.67■□□□□ 0.1
CLN3-212ENST00000564574 RNF2Q99496 336 aa15.67■□□□□ 0.1
CLN3-212ENST00000564574 SH3BGRL3Q9H299 93 aa15.67■□□□□ 0.1
CLN3-212ENST00000564574 SLC25A32Q9H2D1 315 aa15.67■□□□□ 0.1
CLN3-212ENST00000564574 SEC14L6B5MCN3 397 aa15.66■□□□□ 0.1
CLN3-212ENST00000564574 INSL3P51460 131 aa15.66■□□□□ 0.1
CLN3-212ENST00000564574 C9orf66Q5T8R8 295 aa15.66■□□□□ 0.1
CLN3-212ENST00000564574 EIF5AL1Q6IS14 154 aaKnown RBP15.66■□□□□ 0.1
CLN3-212ENST00000564574 TMEM37Q8WXS4 190 aa15.66■□□□□ 0.1
CLN3-212ENST00000564574 ST8SIA2Q92186 375 aa15.66■□□□□ 0.1
CLN3-212ENST00000564574 VSIRQ9H7M9 311 aa15.66■□□□□ 0.1
CLN3-212ENST00000564574 H3BRN7 92 aa15.65■□□□□ 0.1
CLN3-212ENST00000564574 CHEK1O14757 476 aa15.65■□□□□ 0.1
CLN3-212ENST00000564574 SAP30O75446 220 aa15.65■□□□□ 0.1
CLN3-212ENST00000564574 M6PRP20645 277 aa15.65■□□□□ 0.1
CLN3-212ENST00000564574 SHANK2-AS3Q9BTD1 123 aa15.65■□□□□ 0.1
CLN3-212ENST00000564574 RHPN1-AS1Q9BWJ2 59 aa15.65■□□□□ 0.1
CLN3-212ENST00000564574 MRPL32Q9BYC8 188 aaKnown RBP15.65■□□□□ 0.1
CLN3-212ENST00000564574 SLC25A39Q9BZJ4 359 aaPredicted RBP15.65■□□□□ 0.1
CLN3-212ENST00000564574 GPR61Q9BZJ8 451 aa15.65■□□□□ 0.1
CLN3-212ENST00000564574 TECRQ9NZ01 308 aaKnown RBP15.65■□□□□ 0.1
CLN3-212ENST00000564574 RFNGQ9Y644 331 aa15.65■□□□□ 0.1
CLN3-212ENST00000564574 BUB3O43684 328 aa15.64■□□□□ 0.09
CLN3-212ENST00000564574 CD5P06127 495 aa15.64■□□□□ 0.09
CLN3-212ENST00000564574 EDN2P20800 178 aa15.64■□□□□ 0.09
CLN3-212ENST00000564574 C1orf194Q5T5A4 169 aa15.64■□□□□ 0.09
CLN3-212ENST00000564574 ADAMTSL5Q6ZMM2 481 aa15.64■□□□□ 0.09
CLN3-212ENST00000564574 LINC00305Q7Z4B0 112 aa15.64■□□□□ 0.09
CLN3-212ENST00000564574 DYNLRB2Q8TF09 96 aa15.64■□□□□ 0.09
CLN3-212ENST00000564574 BOLA1Q9Y3E2 137 aa15.64■□□□□ 0.09
CLN3-212ENST00000564574 IGHV3-49A0A0A0MS15 119 aa15.63■□□□□ 0.09
CLN3-212ENST00000564574 ZNF98A6NK75 572 aa15.63■□□□□ 0.09
CLN3-212ENST00000564574 APOHP02749 345 aaPredicted RBP15.63■□□□□ 0.09
CLN3-212ENST00000564574 GCSAMLQ5JQS6 135 aa15.63■□□□□ 0.09
CLN3-212ENST00000564574 AKR1C8PQ5T2L2 129 aa15.63■□□□□ 0.09
CLN3-212ENST00000564574 C16orf54Q6UWD8 224 aa15.63■□□□□ 0.09
CLN3-212ENST00000564574 UHRF2Q96PU4 802 aa15.63■□□□□ 0.09
CLN3-212ENST00000564574 RHOBP62745 196 aa15.62■□□□□ 0.09
CLN3-212ENST00000564574 TMEM41BQ5BJD5 291 aa15.62■□□□□ 0.09
CLN3-212ENST00000564574 FAM78BQ5VT40 261 aa15.62■□□□□ 0.09
CLN3-212ENST00000564574 OR10G4Q8NGN3 311 aa15.62■□□□□ 0.09
CLN3-212ENST00000564574 OR10G9Q8NGN4 311 aa15.62■□□□□ 0.09
CLN3-212ENST00000564574 OR10G7Q8NGN6 311 aa15.62■□□□□ 0.09
CLN3-212ENST00000564574 OR2K2Q8NGT1 345 aa15.62■□□□□ 0.09
CLN3-212ENST00000564574 GPR82Q96P67 336 aa15.62■□□□□ 0.09
CLN3-212ENST00000564574 NBEAL1Q6ZS30 2694 aa15.61■□□□□ 0.09
CLN3-212ENST00000564574 IGHV3OR16-13A0A075B7E8 117 aa15.61■□□□□ 0.09
CLN3-212ENST00000564574 IGHV3-74A0A0B4J1X5 117 aa15.61■□□□□ 0.09
CLN3-212ENST00000564574 UMAD1C9J7I0 102 aa15.61■□□□□ 0.09
CLN3-212ENST00000564574 RAB2AP61019 212 aa15.61■□□□□ 0.09
CLN3-212ENST00000564574 GLMPQ8WWB7 406 aa15.61■□□□□ 0.09
CLN3-212ENST00000564574 PHYHIPLQ96FC7 376 aa15.61■□□□□ 0.09
CLN3-212ENST00000564574 MLXQ9UH92 298 aa15.61■□□□□ 0.09
CLN3-212ENST00000564574 FUT9Q9Y231 359 aa15.61■□□□□ 0.09
CLN3-212ENST00000564574 IGHV3-66A0A0C4DH42 116 aa15.6■□□□□ 0.09
CLN3-212ENST00000564574 A0A1W2PPV4 95 aa15.6■□□□□ 0.09
CLN3-212ENST00000564574 HELTA6NFD8 242 aa15.6■□□□□ 0.09
CLN3-212ENST00000564574 WIPF1O43516 503 aa15.6■□□□□ 0.09
CLN3-212ENST00000564574 IGLV1-51P01701 117 aa15.6■□□□□ 0.09
CLN3-212ENST00000564574 DEFB114Q30KQ6 69 aa15.6■□□□□ 0.09
CLN3-212ENST00000564574 OR8I2Q8N0Y5 310 aa15.6■□□□□ 0.09
CLN3-212ENST00000564574 TMED6Q8WW62 240 aa15.6■□□□□ 0.09
CLN3-212ENST00000564574 SCRT1Q9BWW7 348 aa15.6■□□□□ 0.09
CLN3-212ENST00000564574 SEPSECSQ9HD40 501 aaKnown RBP15.6■□□□□ 0.09
CLN3-212ENST00000564574 TRAV25A0A0B4J276 109 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms