RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 C1orf194Q5T5A4 169 aa11.43□□□□□ -0.58
VPS39-203ENST00000561797 TMEM144Q7Z5S9 345 aa11.43□□□□□ -0.58
VPS39-203ENST00000561797 ZNF431Q8TF32 576 aaPredicted RBP11.43□□□□□ -0.58
VPS39-203ENST00000561797 LINC00052Q96N35 136 aa11.43□□□□□ -0.58
VPS39-203ENST00000561797 WDR12Q9GZL7 423 aaKnown RBP11.43□□□□□ -0.58
VPS39-203ENST00000561797 SLC25A22Q9H936 323 aa11.43□□□□□ -0.58
VPS39-203ENST00000561797 CLEC5AQ9NY25 188 aa11.43□□□□□ -0.58
VPS39-203ENST00000561797 RCL1Q9Y2P8 373 aaKnown RBP11.43□□□□□ -0.58
VPS39-203ENST00000561797 C5orf51A6NDU8 294 aa11.42□□□□□ -0.58
VPS39-203ENST00000561797 MBPP02686 304 aaPredicted RBP11.42□□□□□ -0.58
VPS39-203ENST00000561797 MZT2BQ6NZ67 158 aa11.42□□□□□ -0.58
VPS39-203ENST00000561797 TMEM14EPQ6UXP3 125 aa11.42□□□□□ -0.58
VPS39-203ENST00000561797 LINC00299Q6ZSB3 139 aa11.42□□□□□ -0.58
VPS39-203ENST00000561797 CYP2G1PQ6ZSU1 146 aa11.42□□□□□ -0.58
VPS39-203ENST00000561797 C12orf45Q8N5I9 185 aaPredicted RBP11.42□□□□□ -0.58
VPS39-203ENST00000561797 OR10P1Q8NGE3 313 aa11.42□□□□□ -0.58
VPS39-203ENST00000561797 OR1B1Q8NGR6 318 aa11.42□□□□□ -0.58
VPS39-203ENST00000561797 SEPSECSQ9HD40 501 aaKnown RBP11.42□□□□□ -0.58
VPS39-203ENST00000561797 DOK5Q9P104 306 aa11.42□□□□□ -0.58
VPS39-203ENST00000561797 TBC1D24Q9ULP9 559 aa11.42□□□□□ -0.58
VPS39-203ENST00000561797 LSM5Q9Y4Y9 91 aaKnown RBP11.42□□□□□ -0.58
VPS39-203ENST00000561797 STARD9Q9P2P6 4700 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 RYR3Q15413 4870 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 TSC22D2O75157 780 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 IL5P05113 134 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 ATF4P18848 351 aaPredicted RBP11.41□□□□□ -0.58
VPS39-203ENST00000561797 ID1P41134 155 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 TAS2R30P59541 319 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 DEFB1P60022 68 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 DLK1P80370 383 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 TMEM41BQ5BJD5 291 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 TMEM147Q9BVK8 224 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 SLC25A32Q9H2D1 315 aa11.41□□□□□ -0.58
VPS39-203ENST00000561797 C7orf66A4D0T2 115 aa11.4□□□□□ -0.58
VPS39-203ENST00000561797 NUPR2A6NF83 97 aa11.4□□□□□ -0.58
VPS39-203ENST00000561797 ZNF98A6NK75 572 aa11.4□□□□□ -0.58
VPS39-203ENST00000561797 H3BMM0 161 aa11.4□□□□□ -0.58
VPS39-203ENST00000561797 L7N2F9 121 aa11.4□□□□□ -0.58
VPS39-203ENST00000561797 VAMP2P63027 116 aa11.4□□□□□ -0.58
VPS39-203ENST00000561797 GDF5OSQ5U4N7 250 aa11.4□□□□□ -0.58
VPS39-203ENST00000561797 NPVFQ9HCQ7 196 aa11.4□□□□□ -0.58
VPS39-203ENST00000561797 MGAT4CQ9UBM8 478 aa11.4□□□□□ -0.58
VPS39-203ENST00000561797 SLC45A2Q9UMX9 530 aa11.4□□□□□ -0.58
VPS39-203ENST00000561797 K7EPK0 472 aa11.39□□□□□ -0.59
VPS39-203ENST00000561797 SOCS3O14543 225 aa11.39□□□□□ -0.59
VPS39-203ENST00000561797 IGKV3-20P01619 116 aa11.39□□□□□ -0.59
VPS39-203ENST00000561797 GALR1P47211 349 aa11.39□□□□□ -0.59
VPS39-203ENST00000561797 PSMB3P49720 205 aa11.39□□□□□ -0.59
VPS39-203ENST00000561797 NANOS2P60321 138 aaKnown RBP11.39□□□□□ -0.59
VPS39-203ENST00000561797 ARL16Q0P5N6 197 aa11.39□□□□□ -0.59
VPS39-203ENST00000561797 ASAH1Q13510 395 aa11.39□□□□□ -0.59
VPS39-203ENST00000561797 CEMP1Q6PRD7 247 aaPredicted RBP11.39□□□□□ -0.59
VPS39-203ENST00000561797 C11orf45Q8TAV5 145 aa11.39□□□□□ -0.59
VPS39-203ENST00000561797 RSG1Q9BU20 258 aa11.39□□□□□ -0.59
VPS39-203ENST00000561797 C11orf68Q9H3H3 251 aaKnown RBP11.39□□□□□ -0.59
VPS39-203ENST00000561797 XCL2Q9UBD3 114 aa11.39□□□□□ -0.59
VPS39-203ENST00000561797 OR5G3P0C626 314 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 LINC00869P0C866 280 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 HLA-DRB4P13762 266 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 S100A7P31151 101 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 BCAP31P51572 246 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 FXYD7P58549 80 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 NUTF2P61970 127 aaKnown RBP11.38□□□□□ -0.59
VPS39-203ENST00000561797 PHLDA1Q8WV24 401 aaPredicted RBP11.38□□□□□ -0.59
VPS39-203ENST00000561797 C16orf92Q96LL3 132 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 C2orf50Q96LR7 162 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 SCRT1Q9BWW7 348 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 HIGD1AQ9Y241 93 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 HLA-DRB4X5D2U9 266 aa11.38□□□□□ -0.59
VPS39-203ENST00000561797 IGHV4-28A0A0C4DH34 117 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 FNDC10F2Z333 226 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 ISLRO14498 428 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 HYPMO75409 117 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 UPK1BO75841 260 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 RAP2BP61225 183 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 SELENOTP62341 195 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 SLC38A11Q08AI6 406 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 TEPPQ6URK8 271 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 Q8NAQ8 132 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 CSNK1G2-AS1Q8NCQ2 148 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 OR4B1Q8NGF8 309 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 ENKURQ8TC29 256 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 SLC25A39Q9BZJ4 359 aaPredicted RBP11.37□□□□□ -0.59
VPS39-203ENST00000561797 SAV1Q9H4B6 383 aaPredicted RBP11.37□□□□□ -0.59
VPS39-203ENST00000561797 PTTG2Q9NZH5 202 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 KLK5Q9Y337 293 aaPredicted RBP11.37□□□□□ -0.59
VPS39-203ENST00000561797 X6R8D5 127 aa11.37□□□□□ -0.59
VPS39-203ENST00000561797 FAM24AA6NFZ4 105 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 F6UB75 175 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 H3BRN7 92 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 RBMY1A1P0DJD3 496 aaKnown RBP11.36□□□□□ -0.59
VPS39-203ENST00000561797 RBMY1CP0DJD4 496 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 MIFP14174 115 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 MEOX2P50222 304 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 CAV2P51636 162 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 S100A10P60903 97 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 FGL1Q08830 312 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 RBMY1FQ15415 496 aaKnown RBP11.36□□□□□ -0.59
VPS39-203ENST00000561797 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 FOXI2Q6ZQN5 318 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms