RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 LGI3Q8N145 548 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 C15orf53Q8NAA6 179 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 DTD1Q8TEA8 209 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 NAA50Q9GZZ1 169 aaKnown RBP11.59□□□□□ -0.55
CLN3-208ENST00000561505 SHPKQ9UHJ6 478 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 IGHV3OR16-12A0A075B7B8 117 aa11.58□□□□□ -0.56
CLN3-208ENST00000561505 RRN3P1Q2M238 152 aa11.58□□□□□ -0.56
CLN3-208ENST00000561505 TMEM88Q6PEY1 159 aa11.58□□□□□ -0.56
CLN3-208ENST00000561505 OR4C16Q8NGL9 310 aa11.58□□□□□ -0.56
CLN3-208ENST00000561505 IGF2BP2-AS1Q96M15 143 aa11.58□□□□□ -0.56
CLN3-208ENST00000561505 LINC00052Q96N35 136 aa11.58□□□□□ -0.56
CLN3-208ENST00000561505 TRGV9Q99603 122 aa11.58□□□□□ -0.56
CLN3-208ENST00000561505 RBKSQ9H477 322 aa11.58□□□□□ -0.56
CLN3-208ENST00000561505 SLC45A2Q9UMX9 530 aa11.58□□□□□ -0.56
CLN3-208ENST00000561505 KCNIP3Q9Y2W7 256 aa11.58□□□□□ -0.56
CLN3-208ENST00000561505 IGKV1OR2-108A0A075B7D4 117 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 SNRPGP15A8MWD9 76 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 F6UB75 175 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 PITX3O75364 302 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 AKAIN1P0CW23 69 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 TSPOP30536 169 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 MEOX2P50222 304 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 SMCO1Q147U7 214 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 THAP8Q8NA92 274 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 OR4B1Q8NGF8 309 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 PRRT1Q99946 306 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 PBDC1Q9BVG4 233 aa11.57□□□□□ -0.56
CLN3-208ENST00000561505 ZFP92A6NM28 416 aa11.56□□□□□ -0.56
CLN3-208ENST00000561505 CRXO43186 299 aaPredicted RBP11.56□□□□□ -0.56
CLN3-208ENST00000561505 FABP1P07148 127 aa11.56□□□□□ -0.56
CLN3-208ENST00000561505 EBLN2Q6P2I7 272 aa11.56□□□□□ -0.56
CLN3-208ENST00000561505 LYZL2Q7Z4W2 148 aa11.56□□□□□ -0.56
CLN3-208ENST00000561505 COQ8AQ8NI60 647 aa11.56□□□□□ -0.56
CLN3-208ENST00000561505 C20orf173Q96LM9 149 aa11.56□□□□□ -0.56
CLN3-208ENST00000561505 RPRMQ9NS64 109 aa11.56□□□□□ -0.56
CLN3-208ENST00000561505 RABL2AQ9UBK7 228 aaPredicted RBP11.56□□□□□ -0.56
CLN3-208ENST00000561505 RABL2BQ9UNT1 228 aa11.56□□□□□ -0.56
CLN3-208ENST00000561505 LYRM9A8MSI8 78 aa11.55□□□□□ -0.56
CLN3-208ENST00000561505 CTDSP2O14595 271 aa11.55□□□□□ -0.56
CLN3-208ENST00000561505 CFDP00746 253 aaPredicted RBP11.55□□□□□ -0.56
CLN3-208ENST00000561505 DAD1P61803 113 aa11.55□□□□□ -0.56
CLN3-208ENST00000561505 OR51S1Q8NGJ8 323 aa11.55□□□□□ -0.56
CLN3-208ENST00000561505 OR4D5Q8NGN0 318 aa11.55□□□□□ -0.56
CLN3-208ENST00000561505 ZNRF2Q8NHG8 242 aa11.55□□□□□ -0.56
CLN3-208ENST00000561505 SLC35E1Q96K37 410 aa11.55□□□□□ -0.56
CLN3-208ENST00000561505 DOK5Q9P104 306 aa11.55□□□□□ -0.56
CLN3-208ENST00000561505 ANKRD20A5PA0PJZ0 165 aa11.54□□□□□ -0.56
CLN3-208ENST00000561505 PLAC8L1A1L4L8 177 aa11.54□□□□□ -0.56
CLN3-208ENST00000561505 PRSS46E5RG02 174 aa11.54□□□□□ -0.56
CLN3-208ENST00000561505 LYZP61626 148 aa11.54□□□□□ -0.56
CLN3-208ENST00000561505 TNP2Q05952 138 aa11.54□□□□□ -0.56
CLN3-208ENST00000561505 OR8I2Q8N0Y5 310 aa11.54□□□□□ -0.56
CLN3-208ENST00000561505 PRR13Q9NZ81 148 aa11.54□□□□□ -0.56
CLN3-208ENST00000561505 HTN3P15516 51 aa11.53□□□□□ -0.56
CLN3-208ENST00000561505 B2MP61769 119 aa11.53□□□□□ -0.56
CLN3-208ENST00000561505 SCGB3A2Q96PL1 93 aa11.53□□□□□ -0.56
CLN3-208ENST00000561505 MAGT1Q9H0U3 335 aa11.53□□□□□ -0.56
CLN3-208ENST00000561505 SLC25A32Q9H2D1 315 aa11.53□□□□□ -0.56
CLN3-208ENST00000561505 NBDYA0A0U1RRE5 68 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 DUXBA0A1W2PPF3 345 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 ZNF98A6NK75 572 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 SMIM18P0DKX4 95 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 SLC25A6P12236 298 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 SRPXP78539 464 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 GGNBP1Q5YKI7 109 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 GSG1LQ6UXU4 331 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 CLVS1Q8IUQ0 354 aaPredicted RBP11.52□□□□□ -0.57
CLN3-208ENST00000561505 OR11H7Q8NGC8 314 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 GPR82Q96P67 336 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 SOSTQ9BQB4 213 aa11.52□□□□□ -0.57
CLN3-208ENST00000561505 C7orf50Q9BRJ6 194 aaKnown RBP11.52□□□□□ -0.57
CLN3-208ENST00000561505 APOBP04114 4563 aaKnown RBP11.52□□□□□ -0.57
CLN3-208ENST00000561505 PIGBOS1A0A0B4J2F0 54 aa11.51□□□□□ -0.57
CLN3-208ENST00000561505 GALR1P47211 349 aa11.51□□□□□ -0.57
CLN3-208ENST00000561505 OR2F1Q13607 317 aa11.51□□□□□ -0.57
CLN3-208ENST00000561505 LRTM2Q8N967 370 aa11.51□□□□□ -0.57
CLN3-208ENST00000561505 OR1B1Q8NGR6 318 aa11.51□□□□□ -0.57
CLN3-208ENST00000561505 C16orf92Q96LL3 132 aa11.51□□□□□ -0.57
CLN3-208ENST00000561505 SCP2D1Q9UJQ7 156 aa11.51□□□□□ -0.57
CLN3-208ENST00000561505 TMED3Q9Y3Q3 217 aa11.51□□□□□ -0.57
CLN3-208ENST00000561505 TRAV8-2A0A0B4J237 113 aa11.5□□□□□ -0.57
CLN3-208ENST00000561505 DUSP14O95147 198 aaKnown RBP11.5□□□□□ -0.57
CLN3-208ENST00000561505 AKR1C4P17516 323 aa11.5□□□□□ -0.57
CLN3-208ENST00000561505 CNN1P51911 297 aaKnown RBP11.5□□□□□ -0.57
CLN3-208ENST00000561505 RAB11AP62491 216 aa11.5□□□□□ -0.57
CLN3-208ENST00000561505 C6orf223Q8N319 242 aa11.5□□□□□ -0.57
CLN3-208ENST00000561505 RSG1Q9BU20 258 aa11.5□□□□□ -0.57
CLN3-208ENST00000561505 DNAH5Q8TE73 4624 aa11.5□□□□□ -0.57
CLN3-208ENST00000561505 CBY3A6NI87 242 aa11.49□□□□□ -0.57
CLN3-208ENST00000561505 RGS5O15539 181 aa11.49□□□□□ -0.57
CLN3-208ENST00000561505 PRM2P04554 102 aa11.49□□□□□ -0.57
CLN3-208ENST00000561505 TMEM182Q6ZP80 229 aaPredicted RBP11.49□□□□□ -0.57
CLN3-208ENST00000561505 OR1S1Q8NH92 325 aa11.49□□□□□ -0.57
CLN3-208ENST00000561505 ZNF705GA8MUZ8 300 aaPredicted RBP11.48□□□□□ -0.57
CLN3-208ENST00000561505 C16orf90A8MZG2 172 aa11.48□□□□□ -0.57
CLN3-208ENST00000561505 INSP01308 110 aa11.48□□□□□ -0.57
CLN3-208ENST00000561505 ANXA3P12429 323 aa11.48□□□□□ -0.57
CLN3-208ENST00000561505 AZU1P20160 251 aa11.48□□□□□ -0.57
CLN3-208ENST00000561505 SPCS2Q15005 226 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms